Assoc Prof Katie Baines

Senior Research Fellow

School of Biomedical Sciences and Pharmacy

Career Summary

Biography

I am a Research Fellow in Transplant Immunology in the School of Biomedical Sciences, The University of Newcastle. I am also a Deputy Director and Theme Leader of the Surgical and Transplant Immunology theme of the Immune Health Research Program, Hunter Medical Research Institute. I have extensive experience conducting laboratory-based research in clinical studies and samples collected from people with chronic respiratory disease, and more recently patients with end-stage kidney disease undergoing kidney transplant. My research focuses on in depth molecular characterisation of immune dysfunction in a range of human diseases, where I use state of the art omics technologies to better understand immunophenotypes of disease, and identify novel diagnostic tools that represent active molecular mechansims and will drive a precision medicine approach.


Qualifications

  • PhD, University of Newcastle
  • Bachelor of Biomedical Sciences, University of Newcastle
  • Bachelor of Biomedical Sciences (Hons), University of Newcastle

Keywords

  • Asthma
  • COPD
  • Gene Expression
  • Immunology
  • Inflammation
  • Innate Immunity
  • Molecular Biology
  • Neutrophils

Fields of Research

Code Description Percentage
320103 Respiratory diseases 100

Professional Experience

UON Appointment

Title Organisation / Department
Senior Research Fellow University of Newcastle
School of Biomedical Sciences and Pharmacy
Australia

Academic appointment

Dates Title Organisation / Department
1/1/2015 -  Fellow UON

UoN Research Fellowship

University of Newcastle
School of Medicine and Public Health
Australia
1/1/2012 -  Post Doctoral Research Fellow University of Newcastle
School of Medicine and Public Health
Australia
1/5/2008 - 1/12/2011 Post Doctoral Fellow University of Newcastle
School of Medicine and Public Health
Australia
1/4/2008 - 1/4/2011 Fellow

Hunter Medical Research Institute:- Project Grant

University of Newcastle
School of Medicine and Public Health
Australia
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Publications

For publications that are currently unpublished or in-press, details are shown in italics.


Chapter (4 outputs)

Year Citation Altmetrics Link
2019 Baines K, Simpson J, Fricker M, Gibson P, 'Biology of Neutrophils', Middleton's Allergy 2-Volume Set Principles and Practice, Elsevier, USA (2019)
Co-authors Jodie Simpson, Michael Fricker, Peter Gibson
2013 Baines KJ, Simpson JL, Gibson PG, 'Biology of Neutrophils', 1-2, 280-191 (2013)
DOI 10.1016/B978-0-323-08593-9.00018-8
Citations Scopus - 2
Co-authors Peter Gibson, Jodie Simpson
2013 Baines KJ, Simpson JL, Gibson PG, 'Chapter 17: Biology of Neutrophils.', Middleton's Allergy Principles and Practice., Elsevier, Philadelphia, PA, USA 280-291 (2013)
2009 Simpson JL, Baines KJ, Gibson PG, 'Biology of neutrophils', Middleton's Allergy: Principles & Practice, Mosby, Philadelphia, Pennsylvania 283-294 (2009) [B1]
Co-authors Peter Gibson, Jodie Simpson
Show 1 more chapter

Conference (131 outputs)

Year Citation Altmetrics Link
2024 Brown A, Carrol O, Mayall J, Gomez H, Vinzenz S, Kim R, Donovan C, Williams E, Baines K, Berthon B, Pinkerton J, Hansbro P, Wark P, Foster P, Wynne K, Scott H, Wood L, Horvat J, 'Altering excess glucose responses directly and via female sex hormone manipulation protects against key features of obese experimental asthma', RESPIROLOGY, 29, 31-31 (2024)
Co-authors Jay Horvat, Henry Gomez, Evan J Williams, Katie-Jane Wynne, Jemma Mayall, Chantal Donovan, Bronwyn Berthon
2024 Carroll O, Brown A, Mayall J, Zounemat-Kermani N, Gomez H, Vinzenz S, Kim R, Donovan C, Baines K, Williams E, Berthon B, Wynne K, Scott H, Pinkerton J, Guo Y, Hansbro P, Foster P, Wark P, Dahlen S, Adcock I, Wood L, Horvat J, 'Female sex hormones modulate asthma severity by altering cellular metabolism', RESPIROLOGY, 29, 119-120 (2024)
Co-authors Jay Horvat, Katie-Jane Wynne, Evan J Williams, Jemma Mayall, Chantal Donovan, Bronwyn Berthon, Henry Gomez
2023 Williams EJ, Wood LG, Dowling LR, Stanton S, Baines KJ, 'Neutrophil extracellular traps in obese asthma', PROCEEDINGS OF THE NUTRITION SOCIETY, 82 (2023)
DOI 10.1017/S0029665123001702
Co-authors Lisa Wood
2023 Murphy V, Nijdam F, Jensen M, Williams E, Robijn A, Gibson P, Baines K, 'Inflammatory biomarkers of gestational diabetes in pregnant women with asthma', RESPIROLOGY, 28, 38-38 (2023)
Co-authors Evan J Williams, Vanessa Murphy, Megan Jensen
2022 Pinkerton J, Kim R, Brown A, Rae B, Donovan C, Mayall J, Ali MK, Scott H, Berthon B, Baines K, Starkey M, Kermani N, Guo Y, Robertson A, O'Neill L, Adcock I, Cooper M, Gibson P, Wood L, Hansbro P, Horvat J, 'Interaction between type 2 cytokine and inflammasome responses in the pathogenesis of obesity-associated asthma', EUROPEAN RESPIRATORY JOURNAL, 60 (2022)
DOI 10.1183/13993003.congress-2022.871
Co-authors Jay Horvat, Chantal Donovan, Jemma Mayall, Bronwyn Berthon, Alexandra Brown, Lisa Wood
2022 Robijn A, Bokern M, Jensen M, Barker D, Baines K, Murphy V, 'Risk factors for asthma exacerbations during pregnancy: a systematic review and meta-analysis', EUROPEAN RESPIRATORY JOURNAL, 60 (2022)
DOI 10.1183/13993003.congress-2022.361
Co-authors Vanessa Murphy, Daniel Barker, Megan Jensen
2022 Williams E, Wood L, Dowling L, Stanton S, Baines K, 'Neutrophil extracellular traps are increased in airways of obese asthmatics', RESPIROLOGY, 27, 74-74 (2022)
Co-authors Evan J Williams, Lisa Wood
2022 Murphy V, Williams E, Whalen O, Campbell L, Karayanidis F, Mallise C, Woolard A, Gibson P, Mattes J, Collison A, Lane A, Baines K, 'Infant autism likelihood is associated with maternal inflammation in pregnancy', RESPIROLOGY, 27, 55-55 (2022)
Co-authors Linda E Campbell, Olivia Whalen, Carly Mallise, Frini Karayanidis, Adam Collison, Joerg Mattes, Peter Gibson, Evan J Williams, Vanessa Murphy
2021 Fricker M, Qin L, Sanchez-Ovando S, Simpson J, Baines K, Riveros C, et al., 'SPUTUM MACROPHAGES ARE TRANSCRIPTOMICALLY ALTERED IN NEUTROPHILIC ASTHMA', RESPIROLOGY (2021)
Co-authors Jodie Simpson, Peter Gibson, Hayley Scott, Michael Fricker, Carlos Riveros
2021 Winter N, Qin L, Gibson P, Mcdonald V, Baines K, Faulkner J, et al., 'VALIDATED SPUTUM MAST CELL/BASOPHIL GENE EXPRESSION MEASURES IN SEVERE ASTHMA', RESPIROLOGY (2021)
Co-authors Vanessa Mcdonald, Peter Gibson, Michael Fricker
2020 Fricker M, Niessen N, Baines K, Simpson J, Scott H, Gibson P, 'Neutrophilic asthma features increased airway classical monocytes', EUROPEAN RESPIRATORY JOURNAL (2020)
DOI 10.1183/13993003.congress-2020.1109
Citations Web of Science - 1
Co-authors Peter Gibson, Jodie Simpson, Michael Fricker, Hayley Scott
2020 Fricker M, Qin L, Niessen N, Baines K, Scott H, Simpson J, Gibson P, 'Sputum mast cells associate with clinical and inflammatory features of asthma', EUROPEAN RESPIRATORY JOURNAL (2020)
DOI 10.1183/13993003.congress-2020.1110
Co-authors Peter Gibson, Jodie Simpson, Hayley Scott, Michael Fricker
2020 Wood LG, Berthon BS, McLoughlin RL, Jensen ME, Hosseini B, Williams EJ, Baines KJ, Collison A, Starkey MR, Wark PA, Mattes J, 'A Fruit and Vegetable Intervention in Children with Asthma Improved Lung Function and Decreased Asthma Related Illness', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 201 (2020)
Co-authors Evan J Williams, Joerg Mattes, Lisa Wood, Bronwyn Berthon, Adam Collison, Peter Wark, Bec Mcloughlin, Megan Jensen
2020 Baines K, Negewo N, Gibson P, Fu J, Simpson J, Wark P, et al., 'A SPUTUM 6 GENE EXPRESSION SIGNATURE REPRODUCIBLY PREDICTS INFLAMMATORY PHENOTYPE AS WELL AS FUTURE EXACERBATIONS OF COPD', RESPIROLOGY (2020)
Co-authors Michael Fricker, Jodie Simpson, Peter Gibson, Vanessa Mcdonald, Peter Wark
2020 Wood L, Berthon B, Mcloughlin R, Jensen M, Hosseini B, Williams E, Baines K, Collison A, Starkey M, Wark P, Mattes J, 'INTERVENTION WITH A HIGH FRUIT AND VEGETABLE DIET IMPROVES LUNG FUNCTION AND DECREASES ASTHMA RELATED ILLNESS IN CHILDREN WITH ASTHMA', RESPIROLOGY, 25, 38-38 (2020)
Co-authors Megan Jensen, Bronwyn Berthon, Joerg Mattes, Peter Wark, Adam Collison, Evan J Williams, Lisa Wood, Bec Mcloughlin
2020 Hosseini B, Wark P, Berthon B, Williams E, Mcloughlin R, Jensen M, Baines K, Collison A, Starkey M, Mattes J, Wood L, 'INCREASING FRUIT AND VEGETABLE INTAKE MODIFIES INNATE IMMUNE RESPONSES IN CHILDREN WITH ASTHMA', RESPIROLOGY, 25, 45-45 (2020)
Co-authors Bronwyn Berthon, Joerg Mattes, Peter Wark, Adam Collison, Evan J Williams, Bec Mcloughlin, Lisa Wood, Megan Jensen
2020 Fricker M, Qin L, Niessen N, Baines K, Scott H, Simpson J, Gibson P, 'RELATIONSHIP OF SPUTUM MAST CELLS WITH CLINICAL AND INFLAMMATORY CHARACTERISTICS OF ASTHMA.', RESPIROLOGY (2020)
Co-authors Peter Gibson, Jodie Simpson, Hayley Scott, Michael Fricker
2019 Niessen NM, Simpson JL, Baines KJ, Gibson PG, Fricker M, 'Differential Tumor Necrosis Factor Ligand and Receptor Expression on Monocyte Subsets in Blood and Sputum', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, TX, Dallas (2019)
Co-authors Michael Fricker, Jodie Simpson, Peter Gibson
2019 Fricker M, Qin L, Simpson J, Baines K, Mcdonald V, Wood L, Powell H, Gibson P, 'Dysregulation of sputum columnar epithelial cells and products in distinct asthma phenotypes', EUROPEAN RESPIRATORY JOURNAL, 54 (2019)
DOI 10.1183/13993003.congress-2019.OA3586
Co-authors Peter Gibson, Lisa Wood, Vanessa Mcdonald, Jodie Simpson, Michael Fricker
2019 Lokwani R, Wark P, Baines K, Barker D, Fricker M, Simpson J, 'Circulatory neutrophils in COPD feature do regulated CD62L expression in comparison with asthma and healthy participants', EUROPEAN RESPIRATORY JOURNAL, 54 (2019)
DOI 10.1183/13993003.congress-2019.PA4384
Citations Web of Science - 1
Co-authors Peter Wark, Daniel Barker, Jodie Simpson, Michael Fricker
2019 Pathinayake P, Nichol K, Wood L, Baines K, Hsu A, Hansbro P, Wark P, 'Inhibition of ER stress suppresses IL-13', EUROPEAN RESPIRATORY JOURNAL, 54 (2019)
DOI 10.1183/13993003.congress-2019.PA4392
Co-authors Peter Wark, Prabuddha Pathinayake, Lisa Wood, Alan Hsu
2019 Sanchez-Ovando S, Pavlidis S, Wark P, Baines KJ, Barker D, Adcock IM, Chung KF, Gibson P, Simpson JL, 'Sputum gene signature comparison study between U-BIOPRED and Australia asthma cohorts', EUROPEAN RESPIRATORY JOURNAL, 54 (2019)
DOI 10.1183/13993003.congress-2019.PA5405
Citations Web of Science - 1
Co-authors Peter Gibson, Daniel Barker, Jodie Simpson, Peter Wark
2019 Sanchez S, Pavlidis S, Adcock I, Chung FK, Barker D, Baines K, Wark P, Simpson J, 'TRANSCRIPTOMIC GENE SIGNATURES IN ADULTS WITH SEVERE ASTHMA: AN ANALYSIS OF U-BIOPRED STUDY AND PRC HEALTHY LUNGS MIAD STUDY', RESPIROLOGY, 24, 62-62 (2019)
Co-authors Peter Wark, Jodie Simpson, Daniel Barker
2019 Niessen N, Simpson J, Baines K, Gibson P, Fricker M, 'DIFFERENTIAL TNFa, TNFR1 AND TNFR2 EXPRESSION ON BLOOD- AND SPUTUM-DERIVED IMMUNE CELLS IN ASTHMA', RESPIROLOGY (2019)
Co-authors Peter Gibson, Michael Fricker, Jodie Simpson
2019 Twaddell S, Baines K, Grainge C, Gibson P, 'MARKERS OF NEUTROPHIL EXTRACELLULAR TRAPS (NETS) ARE HIGHER IN EMPYEMA THAN IN MALIGNANT AND TRANSUDATIVE EFFUSIONS', RESPIROLOGY (2019)
Co-authors Peter Gibson, Christopher Grainge
2018 McLoughlin R, Berthon BS, Baines KJ, Gibson PG, Rogers GB, Arnold D, Wood LG, 'Soluble Fibre Downregulates Airway Histone Deacetylase 9 Expression Which Is Associated with Eosinophilic Inflammation in Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 197 (2018)
Co-authors Peter Gibson, Lisa Wood, Bronwyn Berthon, Bec Mcloughlin
2018 Williams EJ, Guilleminault L, Berthon BS, Baines KJ, Gibson PG, Wright T, Karihaloo C, Gately M, Wood LG, 'Anti-Inflammatory Effects of Sulforaphane on Adipose Tissue Macrophages Isolated from Obese Subjects with and Without Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 197 (2018)
Co-authors Lisa Wood, Peter Gibson, Evan J Williams, Bronwyn Berthon
2018 Christensen M, Baines KJ, Gibson PG, Backer V, Sverrild A, Bulow AV, Porsbjerg C, 'Validation of the Six-Gene Sputum Signature for Inflammatory Phenotyping Severe Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, San Diego, CA (2018)
Co-authors Peter Gibson
2018 Pathinayake PS, Nichol KS, Baines KJ, Wood LG, Hsu AC, Wark PAB, 'The Unfolded Protein Response Is Heightened in Eosinophilic Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 197 (2018)
Co-authors Lisa Wood, Alan Hsu, Peter Wark, Prabuddha Pathinayake
2018 Frossing L, Von Bulow A, Christensen MR, Backer V, Gibson P, Baines K, Porsbjerg C, 'Discriminating phenotypes of severe eosinophilic asthma using gene profiling in sputum', EUROPEAN RESPIRATORY JOURNAL, Paris, FRANCE (2018)
DOI 10.1183/13993003.congress-2018.OA5153
Co-authors Peter Gibson
2018 Wark PA, Wright T, Goon K, Baran R, Dorahy D, Baines K, 'A PERIPHERAL BLOOD TRANSCRIPTIONAL PROFILE IS ASSOCIATED WITH RISK OF FUTURE EXACERBATIONS IN ADULTS WITH CYSTIC FIBROSIS', PEDIATRIC PULMONOLOGY (2018)
Co-authors Peter Wark
2018 Ruffles T, Marchant J, Buntain H, Mastera I, Upham J, Yerkovich S, et al., 'PROTRACTED BACTERIAL BRONCHITIS (PBB)-LONG-TERM OUTCOMES AT FIVE YEARS: A COHORT STUDY', RESPIROLOGY (2018)
Co-authors Peter Gibson, Jodie Simpson
2018 Fricker M, Powell H, Gibson P, Baines K, 'A SPUTUM SIX GENE SIGNATURE PREDICTS INFLAMMATORY AND EXACERBATION PHENOTYPES IN UNCONTROLLED MODERATE-TO-SEVERE ASTHMA: AN AMAZES SUB-ANALYSIS', RESPIROLOGY (2018)
Co-authors Michael Fricker, Peter Gibson
2018 Fricker M, Qin L, Erriah M, Brooks C, Simpson J, Baines K, Gibson P, 'COMBINED FLOW CYTOMETRY AND GENE EXPRESSION PROFILING OF MAST CELLS AND BASOPHILS IN ASTHMATIC SPUTUM', RESPIROLOGY (2018)
Co-authors Jodie Simpson, Peter Gibson, Michael Fricker
2018 Pabreja K, Erriah M, Baines KJ, Fricker M, Karlsson A, Bylund J, et al., 'Effect of Galectin-3 on Macrophage Efferocytosis in Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, CA, San Diego (2018)
Co-authors Michael Fricker, Jodie Simpson
2018 Pathinayake P, Nichol K, Baines K, Wood L, Hsu A, Wark P, 'THE UNFOLDED PROTEIN RESPONSE VARIES BETWEEN INFLAMMATORY PHENOTYPES OF ASTHMA' (2018)
DOI 10.1111/resp.13267
Co-authors Prabuddha Pathinayake, Lisa Wood, Alan Hsu
2017 Mcdonald V, Clark V, Wark P, Baines K, Gibson P, 'Multidimensional assessment and targeted therapy of severe asthma: a randomised controlled trial (RCT)', EUROPEAN RESPIRATORY JOURNAL, Milan, ITALY (2017)
DOI 10.1183/1393003.congress-2017.OA1482
Citations Web of Science - 3
Co-authors Peter Wark, Vanessa Mcdonald, Peter Gibson, Vanessa Clark
2017 Wood LG, Berthon BS, Zapirain R, Leong LEX, Baines KA, Gibson PG, Arnold D, Rogers G, 'Airway Inflammation, Asthma Control And Gut Microbiome Are Improved By Soluble Fibre Supplementation', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 195 (2017)
Co-authors Lisa Wood, Bronwyn Berthon, Peter Gibson
2017 Erriah M, Pabreja K, Baines KJ, Fricker M, Simpson JL, 'Galectin-3 Expression In Monocyte-Derived Macrophages From Severe Asthmatics', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, DC, Washington (2017)
Co-authors Michael Fricker, Jodie Simpson
2017 Simpson JL, Pabreja K, Baines KJ, Eyres F, Yang M, Nair P, et al., 'Sputum Il-27 Gene Expression In Asthma Endotypes', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, Washington, DC (2017)
Co-authors Ming Yang, Peter Gibson, Jodie Simpson
2017 Wood LG, Li Q, Scott HA, Berthon BS, Gibson PG, Baines KA, 'Saturated Fatty Acids, But Not N-6 Polyunsaturated Fatty Acids Or Carbohydrates, Increase Airway Inflammation In Non-Obese Asthmatics', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 195 (2017)
Co-authors Bronwyn Berthon, Lisa Wood, Hayley Scott, Peter Gibson
2017 Wood LG, Berthon BS, Zapirain R, Leong LEX, Baines KJ, Gibson PG, Arnold D, Rogers GB, 'ASTHMA CONTROL, AIRWAY INFLAMMATION AND GUT MICROBIOME ARE IMPROVED BY SOLUBLE FIBRE SUPPLEMENTATION', RESPIROLOGY, 22, 21-21 (2017)
Citations Web of Science - 1
Co-authors Bronwyn Berthon, Peter Gibson, Lisa Wood
2017 Pabreja K, Gibson PG, Baines KJ, Eyers F, Yang M, Nair P, et al., 'INCREASED EXPRESSION OF IL-27 IN NEUTROPHILIC ASTHMA', RESPIROLOGY (2017)
Co-authors Peter Gibson, Ming Yang, Jodie Simpson
2017 Sanchez S, Wark P, Baines K, Simpson J, 'ASTHMA GENE SIGNATURES EXPRESSION IN BRONCHIAL BIOPSY', RESPIROLOGY (2017)
Co-authors Peter Wark, Jodie Simpson
2017 Nguyen TH, Maltby S, Simpson JL, Eyers F, Baines KJ, Gibson PG, Foster PS, Yang M, 'MACROPHAGES REGULATE THE DEVELOPMENT OF RSV INDUCED ASTHMA EXACERBATIONS', RESPIROLOGY, 22, 54-54 (2017)
Co-authors Steven Maltby, Ming Yang, Peter Gibson, Jodie Simpson
2017 Wood LG, Li Q, Berthon BS, Gibson PG, Baines KJ, 'SATURATED FATTY ACIDS, BUT NOT N-6 POLYUNSATURATED FATTY ACIDS OR CARBOHYDRATES, INCREASE AIRWAY INFLAMMATION IN NON-OBESE ASTHMATICS', RESPIROLOGY, 22, 64-64 (2017)
Citations Web of Science - 1
Co-authors Lisa Wood, Bronwyn Berthon, Peter Gibson
2017 McDonald VM, Clark VL, Wark PAB, Baines KJ, Gibson PG, 'MULTIDIMENSIONAL ASSESSMENT AND TARGETED THERAPY OF SEVERE PERSISTENT ASTHMA: A RANDOMISED CONTROLLED TRIAL', RESPIROLOGY (2017)
Citations Web of Science - 1
Co-authors Vanessa Clark, Peter Wark, Vanessa Mcdonald, Peter Gibson
2017 Pabreja K, Gibson P, Baines K, Eyers F, Yang M, Nair P, et al., 'IL-27 and asthma endotypes-Is there a connection', EUROPEAN RESPIRATORY JOURNAL, Milan, ITALY (2017)
DOI 10.1183/1393003.congress-2017.PA1159
Citations Web of Science - 1
Co-authors Ming Yang, Peter Gibson, Jodie Simpson
2017 Erriah M, Pabreja K, Baines KJ, Fricker M, Donnelly LE, Simpson JL, 'EFFEROCYTOSIS OF APOPTOTIC GRANULOCYTES BY MONOCYTE-DERIVED MACROPHAGES IN ADULTS WITH ASTHMA', RESPIROLOGY (2017)
Co-authors Michael Fricker, Jodie Simpson
2017 Lokwani R, Baines KJ, AB Wark P, Simpson JL, 'INCREASED PRESENCE OF HYPER-SEGMENTED AIRWAY NEUTROPHILS IN ASTHMA AND BRONCHIECTASIS PATIENTS', RESPIROLOGY (2017)
Co-authors Peter Wark, Jodie Simpson
2017 Wood LG, Williams EJ, Berthon BS, Baines KA, 'Effects of an encapsulated fruit and vegetable juice concentrate on obesity-induced systemic inflammation', FASEB JOURNAL, 31 (2017)
Citations Web of Science - 2
Co-authors Bronwyn Berthon, Lisa Wood, Evan J Williams
2016 Periyalil H, Wood L, Karihaloo C, Wright T, Gibson P, 'OBESE ASTHMATICS ARE CHARACTERISED BY ALTERED ADIPOSE TISSUE MACROPHAGE ACTIVATION', RESPIROLOGY, 21, 44-44 (2016)
Co-authors Lisa Wood, Peter Gibson
2016 Horvat J, Kim R, Pinkerton J, Essilfie A-T, Robertson A, Baines K, Mayall J, Starkey M, Wark P, Gibson P, O'Neill L, Cooper M, Hansbro P, 'NLRP3 inflammasome-mediated, IL-1 beta-dependent inflammatory responses drive steroid-resistant asthma', EUROPEAN RESPIRATORY JOURNAL, 48 (2016)
DOI 10.1183/13993003.congress-2016.PA564
Co-authors Peter Wark, Jay Horvat, Jemma Mayall, Peter Gibson
2016 Negewo N, Gibson , Wood , Baines , McDonald , 'Effect of weight loss on COPD-associated comorbidities in obese COPD' (2016)
DOI 10.1183/13993003.congress-2016.PA643
Citations Web of Science - 1
Co-authors Peter Gibson, Vanessa Mcdonald, Lisa Wood
2016 Kim RY, Pinkerton JW, Essilfie A-T, Robertson AA, Baines KJ, Mayall JR, Starkey MR, Wark PA, Gibson PG, O'Neill LA, Cooper MA, Horvat JC, Hansbro PM, 'Nlrp3 Inflammasome-Mediated, Il-1 beta-Dependent Inflammatory Responses Drive Severe, Steroid-Insensitive Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 193 (2016)
Co-authors Peter Wark, Jay Horvat, Peter Gibson, Jemma Mayall
2016 Wood LG, Halnes I, Baines K, McDonald-Wicks L, Gibson PG, 'A Soluble Fibre Challenge Reduces Airway Inflammation In Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 193 (2016)
Co-authors Peter Gibson, Lisa Wood
2016 Kim R, Pinkerton J, Essilfie A, Robertson A, Baines K, Mayall J, Starkey M, Wark P, Gibson P, O'Neill L, Cooper M, Horvat J, Hansbro P, 'NLRP3 INFLAMMASOME- MEDIATED, IL-1 beta-DEPENDENT INFLAMMATORY RESPONSES DRIVE SEVERE, STEROID-INSENSITIVE ASTHMA', RESPIROLOGY, 21, 46-46 (2016)
Co-authors Peter Wark, Jay Horvat, Peter Gibson, Jemma Mayall
2015 Tang F, Foxley G, Gibson P, Burgess J, Baines K, Oliver B, 'Different innate neutrophil responses in controlled and uncontrolled asthma', EUROPEAN RESPIRATORY JOURNAL (2015)
DOI 10.1183/13993003.congress-2015.PA5037
Co-authors Peter Gibson
2015 Tang F, Hansbro P, Burgess J, Baines K, Oliver B, 'NEUTROPHILS DISPLAY IMMUNOREGULATORY ROLES IN RHINOVIRUS INFECTIONS', RESPIROLOGY, Queensland, AUSTRALIA (2015) [E3]
2015 Upham J, Chen A, Carroll M, Petsky H, Pizzutto S, Yerkovich S, et al., 'IMMUNE RESPONSES TO NONTYPEABLE HAEMOPHILUS INFLUENZAE IN PROTRACTED BACTERIAL BRONCHITIS', RESPIROLOGY, Queensland, AUSTRALIA (2015) [E3]
Citations Web of Science - 2
Co-authors Peter Gibson, Jodie Simpson
2015 Baines K, Wright T, Simpson J, McDonald V, Wood L, Gibson P, 'Excessive neutrophil extracellular traps are associated with inflammation in chronic airway disease', Respirology, 19 (2015) [E3]
Co-authors Lisa Wood, Vanessa Mcdonald, Jodie Simpson, Peter Gibson
2015 Erriah M, Gao P, Baines K, Gibson P, Simpson J, 'SPUTUM GALECTIN-3 EXPRESSION IS ASSOCIATED WITH EOSINOPHILS IN COPD', RESPIROLOGY, Queensland, AUSTRALIA (2015) [E3]
Co-authors Peter Gibson, Jodie Simpson
2015 Negewo N, McDonald V, Baines K, Wark P, Simpson J, Jones P, Gibson P, 'Can blood eosinophils predict sputum eosinophils in stable COPD?', EUROPEAN RESPIRATORY JOURNAL (2015)
DOI 10.1183/13993003.congress-2015.PA3967
Citations Web of Science - 2
Co-authors Vanessa Mcdonald, Peter Gibson, Peter Wark, Jodie Simpson
2015 Tang F, Hansbro P, Burgess J, Baines K, Oliver B, 'LSC Abstract - A novel immune regulatory function of neutrophils in rhinovirus infections', EUROPEAN RESPIRATORY JOURNAL (2015)
DOI 10.1183/13993003.congress-2015.PA2606
2015 Tang F, Hansbro P, Burgess J, Baines K, Oliver B, 'Neutrophils are immuno-modulatory in rhinovirus infections', EUROPEAN RESPIRATORY JOURNAL (2015)
DOI 10.1183/13993003.congress-2015.PA5036
2015 Porsbjerg C, Sverrild A, Baines K, Gibson P, Backer V, 'Lung function impairment in adult asthma increases the risk of systemic inflammation', EUROPEAN RESPIRATORY JOURNAL (2015)
DOI 10.1183/13993003.congress-2015.PA4017
Co-authors Peter Gibson
2015 Upham JW, Chang A, Pizzutto S, Carroll M, Gibson P, Simpson J, et al., 'Immune Responses To Non-Typeable Haemophilus Influenzae In Protracted Bacterial Bronchitis', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, Denver, CO (2015)
Co-authors Peter Gibson, Jodie Simpson
2015 McDonald V, Wark P, Baines K, Gibson P, 'A multidimensional assessment of severe asthma', American Journal of Respiratory and Critical Care Medicine, Denver, CO (2015) [E3]
Co-authors Peter Wark, Vanessa Mcdonald, Peter Gibson
2015 Tang F, Gibson P, Foxley G, Burgess J, Baines K, Oliver B, 'Neutrophils from people with uncontrolled asthma have a deficient CXCL8 response to bacteria but not to viruses', Am J Resp Crit Care Med (2015) [E3]
Co-authors Peter Gibson
2015 Baines K, Wright T, Simpson J, McDonald V, Wood L, Gibson P, 'Accumulation of neutrophil extracellular traps is associated with inflammation in neutrophilic asthma and COPD', Am J Resp Crit Care Med, 191 (2015) [E3]
Co-authors Peter Gibson, Vanessa Mcdonald, Lisa Wood, Jodie Simpson
2015 McDonald V, Wark P, Baines K, Gibson P, 'The multidimensional components of severe asthma', Respirology, Gold Coast, Qld (2015) [E3]
Co-authors Peter Gibson, Peter Wark, Vanessa Mcdonald
2015 Tang F, Gibson P, Foxley G, Burgess J, Baines K, Oliver B, 'Deficient CXCL8 response to bacteria but not to viruses in neutrophils from people with uncontrolled asthma', Respirology, Gold Coast, QLD (2015) [E3]
Co-authors Peter Gibson
2015 Tang F, Hansbro P, Burgess J, Baines K, Oliver B, 'A novel immunoregulatory role of neutrophils in viral infections', American Journal of Respiratory and Critical Care Medicine, Denver, CO (2015) [E3]
2014 Sverrild A, Baines K, Backer V, Gibson P, Porsbjerg C, 'Increased IL-33 expression is related to high levels of TLR-2 and-4 in steroid-free subjects with asthma', EUROPEAN RESPIRATORY JOURNAL (2014)
Co-authors Peter Gibson
2014 Porsbjerg C, Baines K, Sverrild A, Backer V, Gibson P, 'Eosinophilic airay inflammation is associated th increased TLR2 and TLR4 expression in adult asthmatics', EUROPEAN RESPIRATORY JOURNAL (2014)
Co-authors Peter Gibson
2014 Baines K, Backer V, Gibson P, Heather P, Porsbjerg C, 'Systemic inflammation, diet, and place of residence modify lung function in Greenland Inuit', EUROPEAN RESPIRATORY JOURNAL (2014)
Co-authors Peter Gibson
2014 Tang F, Van Ly D, Reading P, Spann K, Hartl D, Burgess JK, et al., 'Neutrophils Respond To Viral Surrogates And Respiratory Viruses', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2014)
2014 Fu J-J, McDonald VM, Baines KJ, Mao B, Gibson PG, 'Airway Il-1 Pathway Activation And Systemic Inflammation Predict Future Exacerbation Risk In Asthma And COPD', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2014)
Co-authors Vanessa Mcdonald, Peter Gibson
2014 Baines KJ, Simpson JL, Wood LG, Scott RJ, Fibbens NL, Powell H, Cowan DC, Taylor D, Cowan JO, Gibson PG, 'An Expression Signature Of 6 Genes Can Reliably Distinguish Eosinophilic And Neutrophilic Inflammation And Corticosteroid Response In Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 189 (2014)
Co-authors Lisa Wood, Peter Gibson, Rodney Scott, Jodie Simpson
2014 Wright T, Gibson P, Simpson J, Mcdonald V, Wood L, Baines K, 'ALARMINS IN ASTHMA AND COPD: RELATIONSHIPS TO INFLAMMATORY PHENOTYPES AND DISEASE SEVERITY', RESPIROLOGY, 19, 35-35 (2014) [E3]
Co-authors Lisa Wood, Peter Gibson, Vanessa Mcdonald, Jodie Simpson
2014 Baines K, Simpson J, Wood L, Scott R, Fibbens N, Powell H, Cowan D, Taylor D, Cowan J, Gibson P, 'SPUTUM GENE EXPRESSION OF SIX MARKERS IDENTIFIES ASTHMA INFLAMMATORY PHENOTYPE AND CORTICOSTEROID RESPONSE', RESPIROLOGY, 19, 37-37 (2014) [E3]
Co-authors Jodie Simpson, Peter Gibson, Rodney Scott, Lisa Wood
2014 Baines K, Upham J, Yerkovich S, Chang A, Marchant J, Carroll M, et al., 'INTERLEUKIN-1B IS RELATED TO CLINICAL OUTCOMES IN PROTRACTED BACTERIAL BRONCHITIS', RESPIROLOGY (2014) [E3]
Co-authors Peter Gibson, Jodie Simpson
2014 Simpson J, Gao P, Baines K, Yang I, Reynolds P, Hodge S, et al., 'GALECTIN 3 AND GALECTIN 3 BINDING PROTEIN IN ASTHMA INFLAMMATORY SUBTYPES', RESPIROLOGY (2014) [E3]
Co-authors Peter Gibson, Jodie Simpson
2014 Tang F, Van Ly D, Reading P, Baines KJ, Spann K, Burgess J, et al., 'Viral surrogates and respiratory viruses differentially activate neutrophils', Respirology (2014)
2013 Gunawardhana LP, Baines KJ, Mattes J, Murphy VE, Simpson JL, Gibson PG, 'EPIGENETIC ALTERATIONS IN INFANTS ASSOCIATED WITH MATERNAL ASTHMA DURING PREGNANCY', RESPIROLOGY, 18, 39-39 (2013) [E3]
Co-authors Joerg Mattes, Vanessa Murphy, Peter Gibson, Jodie Simpson
2013 Simpson JL, Baines KJ, Ryan NM, Gibson PG, 'NEUTROPHILIC ASTHMA IS CHARACTERIZED BY INCREASED GERD AND RHINOSINUSITIS WITH SLEEP DISTURBANCE', RESPIROLOGY (2013) [E3]
Co-authors Peter Gibson, Jodie Simpson
2013 Baines KJ, Simpson JL, Mcdonald VM, Hsu AC, Gibson PG, 'DIFFERENTIAL AIRWAY GENE EXPRESSION IN COPD', RESPIROLOGY (2013) [E3]
Co-authors Peter Gibson, Alan Hsu, Vanessa Mcdonald, Jodie Simpson
2013 Brew BK, Marks GB, Almqvist C, Webb K, Marshall NS, 'BREASTFEEDING PROTECTS AGAINST CHILDHOOD SNORING', RESPIROLOGY, 18, 78-78 (2013) [E3]
Co-authors Bronwyn Brew, Jodie Simpson, Peter Gibson
2013 Wang G, Baines KJ, Fu JJ, Gibson PG, 'MAST CELL-BASED PHENOTYPES OF ASTHMA IN INDUCED SPUTUM SAMPLES', RESPIROLOGY (2013) [E3]
Citations Web of Science - 1
Co-authors Peter Gibson
2013 Baines KJ, Simpson JL, Wood LG, Scott RJ, Fibbens NL, Powell H, et al., 'Sputum gene expression of six markers identifies asthma inflammatory phenotype and corticosteroid response.', Australasian Genomic Technologies Association Annual Scientific Meeting, Gold Coast, QLD (2013)
2013 Baines KJ, Upham JW, Yerkovich ST, Chang AB, Marchant J, Carroll M, et al., 'Interleukin-1ß is related to clinical outcomes in protracted bacterial bronchitis', Australasian Society for Immunology, Wellington, NZ (2013)
2012 Simpson JL, Phipps S, Baines KJ, Oreo KM, Gibson PG, 'NALP3 INFLAMMASOME ACTIVATION IN NEUTROPHILIC ASTHMA', RESPIROLOGY (2012) [E3]
Co-authors Peter Gibson, Jodie Simpson
2012 Simpson JL, Phipps S, Baines KJ, Oreo K, Gibson PG, 'NALP3 inflammasome activation in neutrophilic asthma', Respirology, Canberra, ACT (2012) [E3]
Co-authors Peter Gibson, Jodie Simpson
2012 Baines KJ, Simpson JL, Wood LG, Scott RJ, Gibson PG, 'Sputum gene expression of mast cell specific proteases are increased in eosinophilic asthma', Respirology, 17(S1) (2012) [E3]
Co-authors Lisa Wood, Rodney Scott, Peter Gibson, Jodie Simpson
2012 Baines KJ, Simpson JL, Wood LG, Scott RJ, Gibson PG, 'Induced sputum differential gene expression implicates increased p38 signalling activity in severe asthma', Respirology, 17(S1) (2012) [E3]
Co-authors Lisa Wood, Rodney Scott, Peter Gibson, Jodie Simpson
2011 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Systemic upregulation of neutrophil a-defensins and serine proteases in neutrophilic asthma', European Respiratory Society Annual Congress 2011 Abstracts (2011) [E3]
Co-authors Lisa Wood, Rodney Scott, Jodie Simpson, Peter Gibson
2011 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Sputum gene expression of mast cell tryptase and carboxypeptidase A3 are increased in eosinophilic asthma', European Respiratory Society Annual Congress 2011 Abstracts (2011) [E3]
Co-authors Lisa Wood, Peter Gibson, Rodney Scott, Jodie Simpson
2011 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Induced sputum differential gene expression implicates increased p38 signalling activity in severe asthma', European Respiratory Society Annual Congress 2011 Abstracts (2011) [E3]
Co-authors Jodie Simpson, Peter Gibson, Rodney Scott, Lisa Wood
2011 Baines KJ, Simpson JL, Scott RJ, Wood LG, Gibson PG, 'Analysis of systemic gene expression according to inflammatory phenotype of asthma.', Respirology (2011)
2011 Oliver BG, Tang FS, Van Ly D, Burgess JK, Black JL, Baines KJ, 'Imiquimod, poly I:c and rhinovirus induce interleukin (iL)-6 and IL-8 release from polymorphonuclear cells and peripheral blood mononuclear cells: Effect of dexamethasone', American Journal of Respiratory and Critical Care Medicine, Denver, CO (2011) [E3]
2011 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Analysis of systemic gene expression according to inflammatory phenotype of asthma', Respirology, 16(S1) (2011) [E3]
Co-authors Lisa Wood, Rodney Scott, Jodie Simpson, Peter Gibson
2011 Baines KJ, Tooze MK, Wark PA, 'Rhinovirus infected airway epithelial cells have an increased pro-inflammatory response in COPD', Respirology, Perth, WA (2011) [E3]
Co-authors Peter Wark
2011 Gunawardhana LP, Baines KJ, Simpson JL, Mattes J, Murphy VE, Gibson PG, 'Maternal asthma is associated with alterations in DNA methylation profile of peripheral blood of infants', Respirology, 16(S1) (2011) [E3]
Co-authors Vanessa Murphy, Jodie Simpson, Peter Gibson, Joerg Mattes
2011 Oreo K, Baines KJ, Gibson PG, Hansbro PM, 'Pro-inflammatory cytokine production is impaired in response to TLR2 activation in healthy ageing and COPD', Respirology, Perth, WA (2011) [E3]
Co-authors Peter Gibson
2011 Wang F, Xy HA, Baines KJ, Gunawardhana LP, Simpson JL, Ki F, Gibson PG, 'Is chalamydophyla a pneumoniae infection related to non-eosinophilic asthma?', Respirology (2011) [E3]
Co-authors Peter Gibson, Jodie Simpson
2011 Fu J, Baines KJ, Wood LG, Scott HA, Gibson PG, 'Low-grade systemic inflammation is associated with airway neutrophilia in asthma', Respirology, 16 (2011) [E3]
Co-authors Lisa Wood, Peter Gibson, Hayley Scott
2011 Fu J, Baines KJ, Gibson PG, Scott HA, Wood LG, 'Systemic inflammation mediates airway neutrophilia via the regulation of IL-8 receptor mRNA expression', Respirology, 16, 205-206 (2011) [E3]
Co-authors Lisa Wood, Hayley Scott, Peter Gibson
2010 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Molecular phenotypes of asthma defined by gene expression profiling', American Journal of Respiratory and Critical Care Medicine, 181(1) (2010) [E3]
Co-authors Lisa Wood, Rodney Scott, Peter Gibson, Jodie Simpson
2010 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Analysis of systemic gene expression according to inflammatory phenotype of asthma', Biomarker Discovery Conference, - (2010) [E3]
Co-authors Lisa Wood, Jodie Simpson, Peter Gibson, Rodney Scott
2010 Gunawardhana LG, Baines KJ, Simpson JL, Mattes J, Murphy VE, Gibson PG, (Oral) BDCD, 'Maternal asthma is associated with alterations in DNA methylation profile of peripheral blood of infants.', Biomarker Discovery Conference, Shoal Bay, NSW (2010)
2010 Baines KJ, Simpson JL, Scott RJ, Wood LG, Gibson PG, 'Molecular profiling of asthma defined by gene expression', Respirology, 15(S1) (2010) [E3]
Co-authors Peter Gibson, Jodie Simpson, Lisa Wood
2010 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Molecular phenotypes of asthma defined by gene expression profiling', Respirology, 15(S1) (2010) [E3]
Co-authors Peter Gibson, Rodney Scott, Lisa Wood, Jodie Simpson
2009 Baines KJ, Simpson JL, Scott R, Wood LG, Gibson PG, 'Genome wide gene expression of induced sputum in non-eosinophilic asthma', AMATA 2009, - (2009) [E3]
Co-authors Rodney Scott, Lisa Wood, Peter Gibson, Jodie Simpson
2009 Bowden NA, Ashton KA, Stibbard GJ, Cox MB, Baines KJ, Scott R, 'Predicting xeroderma pigmentosum complementation group by gene expression profiling', AMATA 2009, - (2009) [E3]
Co-authors Nikola Bowden, Rodney Scott
2009 Baines KJ, Grissell TV, Gibson PG, Wark PA, 'Molecular mechanisms of rhinovirus infection of primary bronchial epithelial cells', Respirology, Darwin, NT (2009) [E3]
DOI 10.1111/j.1440-1843.2009.01503_1.x
Co-authors Peter Wark, Peter Gibson
2009 Baines KJ, Wood LG, Gibson PG, 'Molecular mechanisms of airway neutrophilia following a low antioxidant diet', Respirology, 14, Suppl. 1 (2009) [E3]
DOI 10.1111/j.1440-1843.2009.01503_1.x
Co-authors Lisa Wood, Peter Gibson
2009 Oreo K, Baines KJ, Gibson PG, Hansbro PM, Simpson JL, 'Toll-like receptor agonists stimulate cytokine release from blood but not airway cells', Respirology, Darwin, NT (2009) [E3]
DOI 10.1111/j.1440-1843.2009.01503_1.x
Co-authors Peter Gibson, Jodie Simpson
2008 Baines KJ, Simpson JL, Scott R, Gibson PG, 'Ageing alters airway and circulating neutrophil function', Respirology, 13 (2008) [E3]
DOI 10.1111/j.1440-1843.2008.01252.x
Co-authors Rodney Scott, Peter Gibson, Jodie Simpson
2008 Baines KJ, Simpson JL, Scott R, Gibson PG, 'Innate immune responses of airway neutrophils are impaired in neutrophilic asthma', Respirology, 13 (2008) [E3]
DOI 10.1111/j.1440-1843.2008.01252.x
Co-authors Rodney Scott, Peter Gibson, Jodie Simpson
2008 Bowden NA, Baines KJ, Cox MB, Scott R, 'Altered gene expression in nucleotide excision repair deficient fibroblasts after UV-light exposure', AACR Meeting Abstracts (2008) [E3]
Co-authors Nikola Bowden, Rodney Scott
2008 Bowden NA, Baines KJ, Cox MB, Scott R, 'Response to uv-light exposure in fibroblasts with differential nucleotide excision repair capacity', ASMR XVII NSW Scientific Meeting: Programme and Abstracts (2008) [E3]
Co-authors Nikola Bowden, Rodney Scott
2008 Bowden NA, Ashton KA, Baines KJ, Cox MB, Scott R, 'Altered gene expression after UV-light induced DNA damage', Conference on Translational Cancer Research: Abstracts (2008) [E3]
Co-authors Nikola Bowden, Rodney Scott
2008 Baines KJ, Simpson JL, Scott RJ, Gibson PG, 'Innate Immune Responses of Neutrophils are Impaired in Neutrophilic Asthma', Am J Resp Crit Care Med (2008)
2008 Baines KJ, Simpson JL, Scott RJ, Gibson PG, 'Ageing Alters Airway and Circulating Neutrophil Function.', Am J Resp Crit Care Med (2008)
2008 Baines KJ, Simpson JL, Scott RJ, Gibson PG, 'Innate Immune Responses of Neutrophils are Impaired in Neutrophilic Asthma.', Respirology (2008)
2008 Baines KJ, Simpson JL, Scott RJ, Gibson PG, 'Ageing Alters Airway and Circulating Neutrophil Function', Respirology (2008)
2007 Baines KJ, Bowden NA, Scott R, Simpson JL, Gibson PG, 'Molecular analysis of neutrophils in asthma subtypes', Respirology (TSANZ Abstracts-Posters), 12 (2007) [E3]
DOI 10.1111/j.1440-1843.2007.001050.x
Co-authors Nikola Bowden, Rodney Scott, Peter Gibson, Jodie Simpson
2007 Baines KJ, Bowden NA, Scott RJ, Simpson JL, Gibson PG, 'Molecular Analysis of Neutrophils in Asthma Subtypes', Am J Resp Crit Care Med (2007)
2007 Gibson PG, Baines KJ, Simpson JL, Scott RJ, 'Gene Expression Profiling Identifies Neutrophilic and Eosinophilic Asthma as Distinct Subtypes.', Eur Resp J (2007)
2006 Baines KJ, Simpson JL, Scott R, Bell NV, Boyle MJ, Gibson PG, 'Enhanced IL-8 release from neutrophils in non-eosinophilic asthma', Respirology, 11 (2006) [E3]
Co-authors Jodie Simpson, Peter Gibson, Rodney Scott
2005 Baines KJ, Bell NV, Simpson JL, Scott RJ, Boyle MJ, Gibson PG, 'Enhanced IL-8 Release from Neutrophils in Non-Eosinophilic Asthma', Inflammation Research (2005)
Show 128 more conferences

Journal article (108 outputs)

Year Citation Altmetrics Link
2025 Negewo NA, Niessen NM, Baines PJ, Williams EJ, Fibbens N, Simpson JL, McDonald VM, Berthon BS, Gibson PG, Baines KJ, 'Targeted DNase treatment of obstructive lung disease: a pilot randomised controlled trial', Erj Open Research, 11 (2025) [C1]

Background Sputum extracellular DNA (eDNA) is associated with disease severity in asthma and COPD and therefore emerging as a potential therapeutic target. The aim of t... [more]

Background Sputum extracellular DNA (eDNA) is associated with disease severity in asthma and COPD and therefore emerging as a potential therapeutic target. The aim of this study was to investigate the effect of 10 days of recombinant human DNase (rhDNase) treatment of eDNA-high asthma and COPD on sputum eDNA levels, neutrophil-related inflammation, lung function and symptoms. Methods Adults with asthma (n=80) or COPD (n=66) were screened for the presence of high (>20 µg·mL-1) sputum eDNA and those eligible (n=18 asthma, n=17 COPD) were randomised to a two-period crossover controlled trial consisting of daily nebulised rhDNase (2.5 mg/2.5 mL) or placebo (5 mL 0.9% saline) for 10 days, with a 2-week washout period. The primary outcome was sputum eDNA, and secondary outcomes included sputum neutrophil extracellular trap (NET)-related biomarkers, inflammatory cell counts, lung function and respiratory symptoms. Results At screening, high eDNA was associated with significantly higher sputum total cell count, sputum colour score and inflammation (HNP1-3, LL-37 and interleukin-1ß) in both asthma and COPD compared to low eDNA groups. In asthma, participants with high eDNA were older and had poorer lung function and asthma control compared to low eDNA. Administration of nebulised rhDNase significantly reduced sputum eDNA levels in both asthma (median (Q1¿Q3) Pre: 48.4 (22.1¿74.1); Post: 17.0 (5.0¿ 31.0) µg·mL-1; p=0.022) and COPD (median (Q1¿Q3) Pre: 39.3 (36.7¿55.6); Post: 25.4 (11.3¿38.6) µg·mL-1; p=0.044) compared to placebo. Symptoms, lung function and NET biomarkers remained unchanged. In asthma, there was a reduction in banded blood neutrophils (3.2 (0¿7.7) to 0.0 (0.0¿1.5); p=0.044). Conclusion Targeted rhDNase treatment for 10 days effectively reduced sputum eDNA in eDNA-high asthma and COPD.

DOI 10.1183/23120541.00347-2024
Co-authors Bronwyn Berthon, Evan J Williams, Vanessa Mcdonald, Peter Gibson, Jodie Simpson, Natalie Niessen
2025 Davidson LA, Niessen NM, Rowlandson M, Myint TM, Trevillian PR, Hibberd AD, Heer MK, Horvat JC, Baines KJ, 'Characterization of BK polyomavirus-associated nephropathy (BKPyVAN) in kidney transplant recipients using transcriptomic analysis: a comprehensive scoping review', Pathogens and Disease, 83 (2025) [C1]
DOI 10.1093/femspd/ftaf006
Co-authors Jay Horvat, Natalie Niessen
2025 Brown AC, Carroll OR, Mayall JR, Zounemat-Kermani N, Vinzenz SLE, Gomez HM, Mills EF, Kim RY, Donovan C, Baines KJ, Williams EJ, Berthon BS, Wynne K, Scott HA, Pinkerton JW, Guo Y, Hansbro PM, Foster PS, Wark PAB, Dahlen SE, Adcock IM, Wood LG, Horvat JC, 'Female sex hormones and the oral contraceptive pill modulate asthma severity through GLUT-1', Mucosal Immunology, 18, 656-667 (2025) [C1]
DOI 10.1016/j.mucimm.2025.02.006
Co-authors Lisa Wood, Jay Horvat, Katie-Jane Wynne, Bronwyn Berthon, Alexandra Brown, Hayley Scott, Henry Gomez, Jemma Mayall, Chantal Donovan, Evan J Williams, Peter Wark
2025 Wood L, Baines K, Arnold D, Berthon B, Gibson P, Zapirain R, 'Dietary fibre as a modulator of airway inflammation in asthma (FAIM Study)' (2025)
2024 Murphy VE, Whalen OM, Williams EJ, Gibson PG, Campbell LE, Karayanidis F, Mallise CA, Woolard A, Robijn AL, Mattes J, Collison AM, Lane AE, Baines KJ, 'Autism likelihood in infants born to mothers with asthma is associated with blood inflammatory gene biomarkers in pregnancy', BRAIN BEHAVIOR & IMMUNITY-HEALTH, 40 (2024) [C1]

Mothers with asthma or atopy have a higher likelihood of having autistic children, with maternal immune activation in pregnancy implicated as a mechanism. This study ai... [more]

Mothers with asthma or atopy have a higher likelihood of having autistic children, with maternal immune activation in pregnancy implicated as a mechanism. This study aimed to determine, in a prospective cohort of mothers with asthma and their infants, whether inflammatory gene expression in pregnancy is associated with likelihood of future autism. Mothers with asthma were recruited to the Breathing for Life Trial. RNA was extracted from blood samples collected at mid-pregnancy. 300 ng total RNA was hybridized with the nCounter Human Inflammation gene expression panel (Nanostring Technologies, 249 inflammation-related genes). Parents completed the First Year Inventory (FYI) at 12-month follow-up, which assessed an infant's likelihood for autism across 2 behavioural domains: social communication and sensory regulation. A total score =19.2 indicated increased likelihood for future autism. Inflammatory gene expression was profiled from 24 mothers: four infants scored in the high autism likelihood range; 20 scored in the low autism likelihood range. Six inflammatory genes were differentially expressed and significantly up-regulated in the high autism likelihood group: CYSLTR2, NOX1, C1QA, CXCL10, C8A, IL23R. mRNA count significantly correlated with social communication FYI score for CYSLTR2 (Pearson r = 0.46, p = 0.024) and CXCL10 (r = 0.43, p = 0.036) and with sensory regulation score for ALOX5 (r = -0.43, p = 0.038) and MAFK (r = -0.46, p = 0.022). In this proof-of-concept study, inflammatory gene expression during pregnancy in mothers with asthma was associated with an infant's likelihood of future autism as well as scores relating to social communication and sensory regulation.

DOI 10.1016/j.bbih.2024.100845
Citations Scopus - 1Web of Science - 1
Co-authors Evan J Williams, Linda E Campbell, Vanessa Murphy, Joerg Mattes, Peter Gibson, Adam Collison, Olivia Whalen, Carly Mallise, Frini Karayanidis
2024 Liu Z, Baines KJ, Niessen NM, Heer MK, Clark D, Bishop GA, Trevillian PR, 'Characterizing Foxp3+ and Foxp3- T cells in the homeostatic state and after allo-activation: resting CD4+Foxp3+ Tregs have molecular characteristics of activated T cells', FRONTIERS IN IMMUNOLOGY, 15 (2024) [C1]
DOI 10.3389/fimmu.2024.1292158
Citations Scopus - 1
Co-authors Natalie Niessen
2024 Huang D, Zhang L, Liu Y, Wang J, Zhang J, Baines KJ, Liu G, Hsu AC-Y, Wang F, Chen Z, Oliver BG, Xie M, Qin L, Liu D, Wan H, Luo F, Li W, Wang G, Gibson PG, 'Activated non-neuronal cholinergic system correlates with non-type 2 inflammation and exacerbations in severe asthma', ANNALS OF ALLERGY ASTHMA & IMMUNOLOGY, 133 (2024) [C1]
DOI 10.1016/j.anai.2024.03.009
Citations Scopus - 5Web of Science - 1
Co-authors Peter Gibson, Alan Hsu
2024 Chang AB, Yerkovich ST, Baines KJ, Burr L, Champion A, Chatfield MD, Eg KP, Goyal V, Marsh RL, McCallum GB, McElrea M, McPhail S, Morgan LC, Morris PS, Nathan AM, O'Farrell H, Sanchez MO, Parsons M, Schultz A, Torzillo PJ, West NP, Versteegh L, Marchant JM, Grimwood K, 'Erdosteine in children and adults with bronchiectasis (BETTER trial): study protocol for a multicentre, double-blind, randomised controlled trial', BMJ OPEN RESPIRATORY RESEARCH, 11 (2024)
DOI 10.1136/bmjresp-2023-002216
Citations Scopus - 3
2023 Negewo NA, Gibson PG, Simpson JL, McDonald VM, Baines KJ, 'Severity of Lung Function Impairment Drives Transcriptional Phenotypes of COPD and Relates to Immune and Metabolic Processes', INTERNATIONAL JOURNAL OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE, 18, 273-287 (2023) [C1]
DOI 10.2147/COPD.S388297
Citations Scopus - 2Web of Science - 1
Co-authors Vanessa Mcdonald, Jodie Simpson, Peter Gibson
2022 Pinkerton JW, Kim RY, Brown AC, Rae BE, Donovan C, Mayall JR, Carroll OR, Ali MK, Scott HA, Berthon BS, Baines KJ, Starkey MR, Kermani NZ, Guo Y-K, Robertson AAB, O'Neill LAJ, Adcock IM, Cooper MA, Gibson PG, Wood LG, Hansbro PM, Horvat JC, 'Relationship between type 2 cytokine and inflammasome responses in obesity-associated asthma', JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 149, 1270-1280 (2022) [C1]
DOI 10.1016/j.jaci.2021.10.003
Citations Scopus - 4Web of Science - 28
Co-authors Jemma Mayall, Chantal Donovan, Bronwyn Berthon, Jay Horvat, Alexandra Brown, Hayley Scott, Peter Gibson, Lisa Wood
2022 Pathinayake PS, Waters DW, Nichol KS, Brown AC, Reid AT, Hsu AC-Y, Horvat JC, Wood LG, Baines KJ, Simpson JL, Gibson PG, Hansbro PM, Wark PAB, 'Endoplasmic reticulum-unfolded protein response signalling is altered in severe eosinophilic and neutrophilic asthma', THORAX, 77, 443-451 (2022) [C1]
DOI 10.1136/thoraxjnl-2020-215979
Citations Scopus - 3Web of Science - 23
Co-authors Prabuddha Pathinayake, Jay Horvat, Lisa Wood, Alexandra Brown, Andrew Reid, Peter Gibson, Jodie Simpson, Peter Wark, Alan Hsu
2022 Robijn AL, Bokern MP, Jensen ME, Barker D, Baines KJ, Murphy VE, 'Risk factors for asthma exacerbations during pregnancy: a systematic review and meta-analysis', EUROPEAN RESPIRATORY REVIEW, 31 (2022) [C1]
DOI 10.1183/16000617.0039-2022
Citations Scopus - 2Web of Science - 13
Co-authors Vanessa Murphy, Megan Jensen, Daniel Barker
2022 Twaddell SH, Baines KJ, 'The Unknown Sequential Behavior of Neutrophil Extracellular Traps in Parapneumonic Effusions Response', CHEST, 161, E251-E251 (2022)
DOI 10.1016/j.chest.2021.12.635
2022 Frossing L, Silberbrandt A, Von Bulow A, Klein DK, Ross Christensen M, Backer V, Baines KJ, Porsbjerg C, 'Airway gene expression identifies subtypes of type 2 inflammation in severe asthma', CLINICAL AND EXPERIMENTAL ALLERGY, 52, 59-69 (2022) [C1]
DOI 10.1111/cea.13966
Citations Scopus - 1Web of Science - 13
2022 Williams EJ, Guilleminault L, Berthon BS, Eslick S, Wright T, Karihaloo C, Gately M, Baines KJ, Wood LG, 'Sulforaphane reduces pro-inflammatory response to palmitic acid in monocytes and adipose tissue macrophages', JOURNAL OF NUTRITIONAL BIOCHEMISTRY, 104 (2022) [C1]
DOI 10.1016/j.jnutbio.2022.108978
Citations Scopus - 8Web of Science - 6
Co-authors Evan J Williams, Lisa Wood, Bronwyn Berthon
2022 Bokern MP, Robijn AL, Jensen ME, Barker D, Baines KJ, Murphy VE, 'Risk factors for asthma exacerbation during pregnancy: protocol for a systematic review and meta-analysis', SYSTEMATIC REVIEWS, 11 (2022)
DOI 10.1186/s13643-022-01975-8
Citations Scopus - 3Web of Science - 1
Co-authors Vanessa Murphy, Daniel Barker, Megan Jensen
2022 Hosseini B, Berthon BS, Jensen ME, McLoughlin RF, Wark PAB, Nichol K, Williams EJ, Baines KJ, Collison A, Starkey MR, Mattes J, Wood LG, 'The Effects of Increasing Fruit and Vegetable Intake in Children with Asthma on the Modulation of Innate Immune Responses', Nutrients, 14, 3087-3087 (2022) [C1]
DOI 10.3390/nu14153087
Citations Scopus - 1Web of Science - 8
Co-authors Megan Jensen, Adam Collison, Peter Wark, Lisa Wood, Joerg Mattes, Evan J Williams, Bronwyn Berthon, Bec Mcloughlin
2022 Fricker M, Qin L, Sanchez-Ovando S, Simpson JL, Baines KJ, Riveros C, Scott HA, Wood LG, Wark PAB, Kermani NZ, Chung KF, Gibson PG, 'An altered sputum macrophage transcriptome contributes to the neutrophilic asthma endotype', ALLERGY, 77, 1204-1215 (2022) [C1]
DOI 10.1111/all.15087
Citations Scopus - 2Web of Science - 15
Co-authors Michael Fricker, Hayley Scott, Peter Gibson, Carlos Riveros, Lisa Wood, Peter Wark, Jodie Simpson
2022 Sanchez-Ovando S, Pavlidis S, Kermani NZ, Baines KJ, Barker D, Gibson PG, Wood LG, Adcock IM, Chung KF, Simpson JL, Wark PAB, 'Pathways linked to unresolved inflammation and airway remodelling characterize the transcriptome in two independent severe asthma cohorts', RESPIROLOGY, 27, 730-738 (2022) [C1]
DOI 10.1111/resp.14302
Citations Scopus - 7Web of Science - 6
Co-authors Peter Gibson, Daniel Barker, Lisa Wood, Jodie Simpson, Peter Wark
2021 Berthon BS, McLoughlin RF, Jensen ME, Hosseini B, Williams EJ, Baines KJ, Taylor SL, Rogers GB, Ivey KL, Morten M, Sena CRDS, Collison AM, Starkey MR, Mattes J, Wark PAB, Wood LG, 'The effects of increasing fruit and vegetable intake in children with asthma: A randomized controlled trial', CLINICAL AND EXPERIMENTAL ALLERGY, 51, 1144-1156 (2021) [C1]
DOI 10.1111/cea.13979
Citations Scopus - 2Web of Science - 16
Co-authors Evan J Williams, Megan Jensen, Bronwyn Berthon, Bec Mcloughlin, Peter Wark, Joerg Mattes, Lisa Wood, Adam Collison
2021 Hosseini B, Berthon BS, Starkey MR, Collison A, McLoughlin RF, Williams EJ, Nichol K, Wark PAB, Jensen ME, Da Silva Sena CR, Baines KJ, Mattes J, Wood LG, 'Children With Asthma Have Impaired Innate Immunity and Increased Numbers of Type 2 Innate Lymphoid Cells Compared With Healthy Controls', FRONTIERS IN IMMUNOLOGY, 12 (2021) [C1]
DOI 10.3389/fimmu.2021.664668
Citations Scopus - 1Web of Science - 8
Co-authors Bronwyn Berthon, Megan Jensen, Evan J Williams, Peter Wark, Lisa Wood, Adam Collison, Bec Mcloughlin, Joerg Mattes
2021 Niessen NM, Gibson PG, Baines KJ, Barker D, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Jenkins C, Peters MJ, Marks GB, Baraket M, Simpson JL, Fricker M, 'Sputum TNF markers are increased in neutrophilic and severe asthma and are reduced by azithromycin treatment', ALLERGY, 76, 2090-2101 (2021) [C1]
DOI 10.1111/all.14768
Citations Scopus - 5Web of Science - 40
Co-authors Peter Gibson, Daniel Barker, Natalie Niessen, Michael Fricker, Jodie Simpson
2021 Williams EJ, Negewo NA, Baines KJ, 'Role of the NLRP3 inflammasome in asthma: Relationship with neutrophilic inflammation, obesity, and therapeutic options', JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 147, 2060-2062 (2021)
DOI 10.1016/j.jaci.2021.04.022
Citations Scopus - 3Web of Science - 29
Co-authors Evan J Williams
2021 Niessen NM, Gibson PG, Simpson JL, Scott HA, Baines KJ, Fricker M, 'Airway monocyte modulation relates to tumour necrosis factor dysregulation in neutrophilic asthma', ERJ OPEN RESEARCH, 7 (2021) [C1]
DOI 10.1183/23120541.00131-2021
Citations Scopus - 1Web of Science - 11
Co-authors Peter Gibson, Hayley Scott, Jodie Simpson, Natalie Niessen, Michael Fricker
2021 Ruffles TJC, Marchant JM, Masters IB, Yerkovich ST, Wurzel DF, Gibson PG, Busch G, Baines KJ, Simpson JL, Smith-Vaughan HC, Pizzutto SJ, Buntain HM, Hodge G, Hodge S, Upham JW, Chang AB, 'Outcomes of protracted bacterial bronchitis in children: A 5-year prospective cohort study', RESPIROLOGY, 26, 241-248 (2021) [C1]

Background and objective: Long-term data on children with PBB has been identified as a research priority. We describe the 5-year outcomes for children with PBB to ascer... [more]

Background and objective: Long-term data on children with PBB has been identified as a research priority. We describe the 5-year outcomes for children with PBB to ascertain the presence of chronic respiratory disease (bronchiectasis, recurrent PBB and asthma) and identify the risk factors for these. Methods: Prospective cohort study was undertaken at the Queensland Children's Hospital, Brisbane, Australia, of 166 children with PBB and 28 controls (undergoing bronchoscopy for symptoms other than chronic wet cough). Monitoring was by monthly contact via research staff. Clinical review, spirometry and CT chest were performed as clinically indicated. Results: A total of 194 children were included in the analysis. Median duration of follow-up was 59 months (IQR: 50¿71 months) post-index PBB episode, 67.5% had ongoing symptoms and 9.6% had bronchiectasis. Significant predictors of bronchiectasis were recurrent PBB in year 1 of follow-up (ORadj = 9.6, 95% CI: 1.8¿50.1) and the presence of Haemophilus influenzae in the BAL (ORadj = 5.1, 95% CI: 1.4¿19.1). Clinician-diagnosed asthma at final follow-up was present in 27.1% of children with PBB. A significant BDR (FEV1 improvement >12%) was obtained in 63.5% of the children who underwent reversibility testing. Positive allergen-specific IgE (ORadj = 14.8, 95% CI: 2.2¿100.8) at baseline and bronchomalacia (ORadj = 5.9, 95% CI: 1.2¿29.7) were significant predictors of asthma diagnosis. Spirometry parameters were in the normal range. Conclusion: As a significant proportion of children with PBB have ongoing symptoms at 5 years, and outcomes include bronchiectasis and asthma, they should be carefully followed up clinically. Defining biomarkers, endotypes and mechanistic studies elucidating the different outcomes are now required.

DOI 10.1111/resp.13950
Citations Scopus - 4Web of Science - 31
Co-authors Peter Gibson, Jodie Simpson
2021 Twaddell SH, Gibson PG, Grainge C, Baines KJ, 'Parapneumonic Effusions Are Characterized by Elevated Levels of Neutrophil Extracellular Traps', CHEST, 160, 1645-1655 (2021) [C1]
DOI 10.1016/j.chest.2021.07.026
Citations Scopus - 1Web of Science - 7
Co-authors Peter Gibson, Christopher Grainge
2021 Niessen NM, Baines KJ, Simpson JL, Scott HA, Qin L, Gibson PG, Fricker M, 'Neutrophilic asthma features increased airway classical monocytes', CLINICAL AND EXPERIMENTAL ALLERGY, 51, 305-317 (2021) [C1]
DOI 10.1111/cea.13811
Citations Scopus - 3Web of Science - 25
Co-authors Hayley Scott, Peter Gibson, Jodie Simpson, Michael Fricker, Natalie Niessen
2021 Zounemat Kermani N, Saqi M, Agapow P, Pavlidis S, Kuo C, Tan KS, Mumby S, Sun K, Loza M, Baribaud F, Sousa AR, Riley J, Wheelock AM, Wheelock CE, De Meulder B, Schofield J, Sanchez-Ovando S, Simpson JL, Baines KJ, Wark PA, Auffray C, Dahlen S-E, Sterk PJ, Djukanovic R, Adcock IM, Guo Y-K, Chung KF, 'Type 2-low asthma phenotypes by integration of sputum transcriptomics and serum proteomics', ALLERGY, 76, 380-383 (2021)
DOI 10.1111/all.14573
Citations Scopus - 2Web of Science - 23
Co-authors Peter Wark, Jodie Simpson
2021 Winter NA, Qin L, Gibson PG, McDonald VM, Baines KJ, Faulkner J, Evans T-J, Fricker M, 'Sputum mast cell/basophil gene expression relates to inflammatory and clinical features of severe asthma', JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 148, 428-438 (2021) [C1]
DOI 10.1016/j.jaci.2021.01.033
Citations Scopus - 4Web of Science - 35
Co-authors Michael Fricker, Vanessa Mcdonald, Peter Gibson
2021 Fricker M, McDonald VM, Winter NA, Baines KJ, Wark PAB, Simpson JL, Gibson PG, 'Molecular markers of type 2 airway inflammation are similar between eosinophilic severe asthma and eosinophilic COPD', ALLERGY, 76, 2079-2089 (2021) [C1]
DOI 10.1111/all.14741
Citations Scopus - 1Web of Science - 9
Co-authors Jodie Simpson, Michael Fricker, Vanessa Mcdonald, Peter Gibson, Peter Wark
2021 Sanchez-Ovando S, Simpson JL, Barker D, Baines KJ, Wark PAB, 'Transcriptomics of biopsies identifies novel genes and pathways linked to neutrophilic inflammation in severe asthma', CLINICAL AND EXPERIMENTAL ALLERGY, 51, 1279-1294 (2021) [C1]
DOI 10.1111/cea.13986
Citations Scopus - 1Web of Science - 16
Co-authors Daniel Barker, Jodie Simpson, Peter Wark
2020 Fricker M, Qin L, Niessen N, Baines KJ, McDonald VM, Scott HA, Simpson JL, Gibson PG, 'Relationship of sputum mast cells with clinical and inflammatory characteristics of asthma', CLINICAL AND EXPERIMENTAL ALLERGY, 50, 696-707 (2020) [C1]
DOI 10.1111/cea.13609
Citations Scopus - 2Web of Science - 17
Co-authors Jodie Simpson, Peter Gibson, Hayley Scott, Vanessa Mcdonald, Michael Fricker, Natalie Niessen
2020 Baines KJ, Fricker M, McDonald VM, Simpson JL, Wood LG, Wark PAB, Macdonald HE, Reid A, Gibson PG, 'Sputum transcriptomics implicates increased p38 signalling activity in severe asthma', RESPIROLOGY, 25, 709-718 (2020) [C1]

Background and objective: Severe asthma is responsible for a disproportionate burden of illness and healthcare costs spent on asthma. This study analyses sputum transcr... [more]

Background and objective: Severe asthma is responsible for a disproportionate burden of illness and healthcare costs spent on asthma. This study analyses sputum transcriptomics to investigate the mechanisms and novel treatment targets of severe asthma. Methods: Induced sputum samples were collected in a cross-sectional study from participants with severe asthma (n = 12, defined as per GINA criteria), non-severe uncontrolled (n = 21) and controlled asthma (n = 21) and healthy controls (n = 15). Sputum RNA was extracted and transcriptomic profiles were generated (Illumina HumanRef-8 V2) and analysed (GeneSpring). Sputum protein lysates were analysed for p38 activation in a validation study (n = 24 asthma, n = 8 healthy) by western blotting. Results: There were 2166 genes differentially expressed between the four groups. In severe asthma, the expression of 1875, 1308 and 563 genes was altered compared to healthy controls, controlled and uncontrolled asthma, respectively. Of the 1875 genes significantly different to healthy controls, 123 were >2-fold change from which four networks were identified. Thirty genes (>2-fold change) were significantly different in severe asthma compared to both controlled asthma and healthy controls. There was enrichment of genes in the p38 signalling pathway that were associated with severe asthma. Phosphorylation of p38 was increased in a subset of severe asthma samples, correlating with neutrophilic airway inflammation. Conclusion: Severe asthma is associated with substantial differences in sputum gene expression that underlie unique cellular mechanisms. The p38 signalling pathway may be important in the pathogenesis of severe asthma, and future investigations into p38 inhibition are warranted as a 'non-Th2' therapeutic option.

DOI 10.1111/resp.13749
Citations Scopus - 2Web of Science - 20
Co-authors Michael Fricker, Jodie Simpson, Peter Wark, Peter Gibson, Andrew Reid, Vanessa Mcdonald, Lisa Wood
2020 Frøssing L, Kjærsgaard Klein D, Backer V, Baines KJ, Porsbjerg C, 'The six-gene expression signature in whole sampled sputum provides clinically feasible inflammatory phenotyping of asthma.', ERJ open research, 6, 1-9 (2020) [C1]
DOI 10.1183/23120541.00280-2019
Citations Scopus - 6Web of Science - 6
2020 Sanchez-Ovando S, Baines KJ, Barker D, Wark PA, Simpson JL, 'Six gene and TH2 signature expression in endobronchial biopsies of participants with asthma', IMMUNITY INFLAMMATION AND DISEASE, 8, 40-49 (2020) [C1]

Background: Both the six gene signature (6GS: CPA3, DNASE1L3, CLC, IL1B, ALPL, and CXCR2) and T-helper 2 signature (TH2S: CLCA1, SERPINB2, and POSTN) are proposed as bi... [more]

Background: Both the six gene signature (6GS: CPA3, DNASE1L3, CLC, IL1B, ALPL, and CXCR2) and T-helper 2 signature (TH2S: CLCA1, SERPINB2, and POSTN) are proposed as biomarkers in the identification of inflammatory phenotypes of asthma in induced sputum and epithelial brushings, respectively. The aim of this study was to explore patterns of gene expression of known signatures, 6GS and TH2S in endobronchial biopsies. Methods: This was an exploratory cross-sectional study of gene expression in endobronchial biopsies of 55 adults with asthma and 9 healthy controls (HC). The expression of the 6GS and TH2S was determined by quantitative polymerase chain reaction. Correlations with clinical and cellular characteristics were performed, and receiver operating characteristic was utilized to assess signatures' ability to predict asthma from HC and inflammatory phenotypes. Results: Gene expression of DNASE1L3 (P =.045) was upregulated in asthma compared with HC, and IL1B (P =.017) was upregulated in neutrophilic asthma compared with non-neutrophilic asthma. In asthma, the expression of CPA3 was negatively associated with ICS daily dose (r = -.339; P =.011), IL1B expression was positively associated with bronchial lavage fluid (BLF) total cell count (r =.340; P =.013) and both CLC and POSTN expression were associated with lymphocytes percentage in BLF (r = -.355, P =.009; r = -.300, P =.025, respectively). Both 6GS (area under curve [AUC] = 86.3%; P =.017) and TH2S (AUC = 72.7%; P =.037) could significantly predict asthma from HC. In addition, 6GS can identify neutrophilic (AUC = 93.2%; P =.005) and TH2S identifies eosinophilic (AUC = 62.7%; P =.033) asthma. Conclusions and Clinical Relevance: There was increased expression of DNASE1L3 in asthma and IL1B in neutrophilic asthma. These results show similar upregulated patterns of expression in two genes of the 6GS in endobronchial biopsies, previously identified in sputum. The upregulation of DNASE1L3 and IL1B suggests that common mechanisms may be at play throughout the airway.

DOI 10.1002/iid3.282
Citations Scopus - 1Web of Science - 10
Co-authors Daniel Barker, Peter Wark, Jodie Simpson
2020 Baines KJ, Negewo NA, Gibson PG, Fu J-J, Simpson JL, Wark PAB, Fricker M, McDonald VM, 'A Sputum 6 Gene Expression Signature Predicts Inflammatory Phenotypes and Future Exacerbations of COPD', INTERNATIONAL JOURNAL OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE, 15, 1577-1590 (2020) [C1]

Background: The 6 gene expression signature (6GS) predicts in¿ammatory phenotype, exacerbation risk, and corticosteroid responsiveness in asthma. In COPD, patterns of a... [more]

Background: The 6 gene expression signature (6GS) predicts in¿ammatory phenotype, exacerbation risk, and corticosteroid responsiveness in asthma. In COPD, patterns of airway in¿ammation are similar, suggesting the 6GS may be useful. This study determines the diagnostic and prognostic ability of 6GS in predicting in¿ammatory phenotypes and exacerbation risk in COPD. Methods: We performed 2 studies: a cross-sectional phenotype prediction study in stable COPD (total N=132; n=34 eosinophilic (E)-COPD, n=42 neutrophilic (N)-COPD, n=39 paucigranulocytic (PG)-COPD, n=17 mixed-granulocytic (MG)-COPD) that assessed 6GS ability to discriminate phenotypes (eosinophilia=3%; neutrophilia=61%); and a prospective cohort study (total n=54, n=8 E-COPD; n=18 N-COPD; n=20 PG-COPD; n=8 MG-COPD, n=21 exacerbation prone (=2/year)) that investigated phenotype and exacerbation prediction utility. 6GS was measured by qPCR and evaluated using multiple logistic regression and area under the curve (AUC). Short-term reproducibility (intra-class correlation) and phenotyping method agreement (¿ statistic) were assessed. Results: In the phenotype prediction study, 6GS could accurately identify and discriminate patients with E-COPD from N-COPD (AUC=96.4%; p<0.0001), PG-COPD (AUC=88.2%; p<0.0001) or MG-COPD (AUC=86.2%; p=0.0001), as well as N-COPD from PG-COPD (AUC=83.6%; p<0.0001) or MG-COPD (AUC=87.4%; p<0.0001) and was reproducible. In the prospective cohort study, 6GS had substantial agreement for neutrophilic in¿ammation (82%, ¿=0.63,p<0.001)and moderate agreement foreosinophilici n¿ammation(78%, ¿=0.42,p<0.001). 6GS could signi¿cantly discriminate exacerbationprone patients (AUC=77.2%; p=0.034). Higher IL1B levels were associated with poorer lung function and increased COPD severity. Conclusion: 6GS can signi¿cantly and reproducibly discriminate COPD in¿ammatory phenotypes and predict exacerbation prone patients and may become a useful molecular diagnostic tool assisting COPD management..

DOI 10.2147/COPD.S245519
Citations Scopus - 1Web of Science - 11
Co-authors Peter Gibson, Vanessa Mcdonald, Michael Fricker, Jodie Simpson, Peter Wark
2020 McDonald VM, Clark VL, Cordova-Rivera L, Wark PAB, Baines KJ, Gibson PG, 'Targeting treatable traits in severe asthma: a randomised controlled trial', EUROPEAN RESPIRATORY JOURNAL, 55 (2020) [C1]
DOI 10.1183/13993003.01509-2019
Citations Scopus - 1Web of Science - 131
Co-authors Peter Wark, Peter Gibson, Vanessa Mcdonald, Vanessa Clark
2019 Fricker M, Gibson PG, Powell H, Simpson JL, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Jenkins C, Peters MJ, Marks GB, Baraket M, Baines KJ, 'A sputum 6-gene signature predicts future exacerbations of poorly controlled asthma', JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 144, 51-+ (2019) [C1]

Background: Improved diagnostic tools for predicting future exacerbation frequency in asthmatic patients are required. A sputum gene expression signature of 6 biomarker... [more]

Background: Improved diagnostic tools for predicting future exacerbation frequency in asthmatic patients are required. A sputum gene expression signature of 6 biomarkers (6-gene signature [6GS], including Charcot-Leyden crystal galectin [CLC]; carboxypeptidase 3 [CPA3]; deoxyribonuclease 1-like 3 [DNASE1L3]; alkaline phosphatase, liver/bone/kidney [ALPL]; CXCR2; and IL1B) predicts inflammatory and treatment response phenotypes in patients with stable asthma. Recently, we demonstrated that azithromycin (AZM) add-on treatment in patients with uncontrolled moderate-to-severe asthma significantly reduced asthma exacerbations (AMAZES clinical trial). Objectives: We sought to test whether the 6GS predicts future exacerbation and inflammatory phenotypes in a subpopulation of AMAZES and to test the effect of AZM therapy on 6GS expression and prognostic capacity. Methods: One hundred forty-two patients (73 placebo-treated and 69 AZM-treated patients) had sputum stored for quantitative PCR of 6GS markers at baseline and after 48 weeks of treatment. Logistic regression and receiver operating characteristic and area under the curve (AUC) determination were performed on baseline measures, and in an exploratory analysis the predictive value of the 6GS was compared with conventional biomarkers for exacerbation and inflammatory phenotypes. Results: The 6GS significantly predicted all future exacerbation phenotypes tested. Calculated AUCs for the 6GS were significantly greater than AUCs for peripheral blood eosinophil counts, sputum neutrophil counts, and combined sputum eosinophil and neutrophil counts. 6GS AUCs were also numerically but not significantly greater than those for fractional exhaled nitric oxide values and sputum eosinophil counts. AZM treatment altered neither 6GS expression nor the predictive capacity of the 6GS for future exacerbation phenotypes. The 6GS was a significant predictor of airway inflammatory phenotype in this population. Conclusion: We demonstrate that a sputum gene signature can predict future exacerbation phenotypes of asthma, with the greatest biomarker performance in identifying those who would experience frequent severe exacerbations. AZM therapy did not modify 6GS expression or biomarker performance, suggesting the therapeutic action of AZM is independent of 6GS-related inflammatory pathways.

DOI 10.1016/j.jaci.2018.12.1020
Citations Scopus - 6Web of Science - 52
Co-authors Peter Gibson, Michael Fricker, Jodie Simpson
2019 Erriah M, Pabreja K, Fricker M, Baines KJ, Donnelly LE, Bylund J, Karlsson A, Simpson JL, 'Galectin-3 enhances monocyte-derived macrophage efferocytosis of apoptotic granulocytes in asthma', RESPIRATORY RESEARCH, 20 (2019) [C1]
DOI 10.1186/s12931-018-0967-9
Citations Scopus - 4Web of Science - 32
Co-authors Jodie Simpson, Michael Fricker
2019 Lokwani R, Wark PAB, Baines KJ, Barker D, Simpson JL, 'Hypersegmented airway neutrophils and its association with reduced lung function in adults with obstructive airway disease: An exploratory study', BMJ Open, 9 (2019) [C1]
DOI 10.1136/bmjopen-2018-024330
Citations Scopus - 1Web of Science - 1
Co-authors Daniel Barker, Peter Wark, Jodie Simpson
2019 Qin L, Gibson PG, Simpson JL, Baines KJ, McDonald VM, Wood LG, Powell H, Fricker M, 'Dysregulation of sputum columnar epithelial cells and products in distinct asthma phenotypes', CLINICAL AND EXPERIMENTAL ALLERGY, 49, 1418-1428 (2019) [C1]

Background: Dysfunction of the bronchial epithelium plays an important role in asthma; however, its measurement is challenging. Columnar epithelial cells are often quan... [more]

Background: Dysfunction of the bronchial epithelium plays an important role in asthma; however, its measurement is challenging. Columnar epithelial cells are often quantified, yet rarely analysed, in induced sputum studies. Objective: We aimed to test whether sputum columnar epithelial cell proportion and count are altered in asthma, and whether they are associated with clinical and inflammatory variables. We aimed to test whether sputum-based measures could provide a relatively non-invasive means through which to monitor airway epithelial activation status. Methods: We examined the relationship of sputum columnar epithelial cells with clinical and inflammatory variables of asthma in a large retrospective cross-sectional cohort (901 participants with asthma and 138 healthy controls). In further studies, we used flow cytometry, microarray, qPCR and ELISA to characterize sputum columnar epithelial cells and their products. Results: Multivariate analysis and generation of 90th centile cut-offs (=11% or =18.1¿×¿104/mL) to identify columnar epithelial cell "high" asthma revealed a significant relationship between elevated sputum columnar cells and male gender, severe asthma and non-neutrophilic airway inflammation. Flow cytometry showed viable columnar epithelial cells were present in all sputum samples tested. An epithelial gene signature (SCGB3A1, LDLRAD1, FOXJ1, DNALI1, CFAP157, CFAP53) was detected in columnar epithelial cell-high sputum. CLCA1 mRNA and periostin protein, previously identified biomarkers of IL-13-mediated epithelial activation, were elevated in columnar epithelial cell-high sputum samples, but only when accompanied by eosinophilia. Conclusions & clinical relevance: Sputum columnar epithelial cells are related to important clinical and inflammatory variables in asthma. Measurement of epithelial biomarkers in sputum samples could allow non-invasive assessment of altered bronchial epithelium status in asthma.

DOI 10.1111/cea.13452
Citations Scopus - 1Web of Science - 11
Co-authors Lisa Wood, Vanessa Mcdonald, Michael Fricker, Jodie Simpson, Peter Gibson
2019 Wood LG, Li Q, Scott HA, Rutting S, Berthon BS, Gibson PG, Hansbro PM, Williams E, Horvat J, Simpson JL, Young P, Oliver BG, Baines KJ, 'Saturated fatty acids, obesity, and the nucleotide oligomerization domain-like receptor protein 3 (NLRP3) inflammasome in asthmatic patients', JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 143, 305-315 (2019) [C1]
DOI 10.1016/j.jaci.2018.04.037
Citations Scopus - 1Web of Science - 90
Co-authors Jodie Simpson, Peter Gibson, Hayley Scott, Evan J Williams, Bronwyn Berthon, Lisa Wood, Jay Horvat
2019 Twaddell SH, Baines KJ, Grainge C, Gibson PG, 'The Emerging Role of Neutrophil Extracellular Traps in Respiratory Disease', CHEST, 156, 774-782 (2019) [C1]

Neutrophil extracellular traps (NETs) are extrusions of intracellular DNA and attached granular material that enable bacterial killing. NETs are increasingly recognized... [more]

Neutrophil extracellular traps (NETs) are extrusions of intracellular DNA and attached granular material that enable bacterial killing. NETs are increasingly recognized for their role in the pathogenesis of respiratory disease. NETs are composed of a complex mix of intracellularly derived material that neutrophils organize within the cytoplasm and then expel in a nondirected manner in the vicinity of invading organisms. Combined, these trap and destroy multiple genera of microbes including bacteria, fungi, viruses, and protozoans, limiting infection especially where phagocytosis is not possible. At first, NET formation was thought to be a terminal event for neutrophils; however, it is now apparent that some neutrophils survive this process, becoming anuclear, and may drive ongoing tissue damage. NETs are now known to be directly cytotoxic to lung epithelium and endothelium, and their excessive production is seen in pneumonia and acute lung injury as well as several chronic diseases, including COPD, asthma, and cystic fibrosis. NETs also appear to play a role in both tumor defense and dissemination, depending on the local microenvironment and the specific tumor subtype. It is becoming increasingly apparent that NET formation can exert a positive or negative influence on multiple respiratory pathologies and that simply globally reducing or increasing NET formation is unlikely to be a therapeutic success. Rather, as our understanding grows, it is likely that targeted NET up- or downregulation along with destruction or protection of already formed NETs may become an additional point of intervention for respiratory physicians.

DOI 10.1016/j.chest.2019.06.012
Citations Scopus - 1Web of Science - 116
Co-authors Christopher Grainge, Peter Gibson
2019 Lokwani R, Wark PAB, Baines KJ, Fricker M, Barker D, Simpson JL, 'Blood Neutrophils In COPD But Not Asthma Exhibit A Primed Phenotype With Downregulated CD62L Expression', INTERNATIONAL JOURNAL OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE, 14, 2517-2525 (2019) [C1]

Purpose: To characterize neutrophils in obstructive airway disease by measuring their surface adhesion molecules and oxidative burst along with characterizing them into... [more]

Purpose: To characterize neutrophils in obstructive airway disease by measuring their surface adhesion molecules and oxidative burst along with characterizing them into different subsets as per their adhesion molecule expression. Patients and methods: Peripheral blood from adults with COPD (n=17), asthma (n=20), and healthy participants (n=19) was examined for expression of CD16, CD62L, CD11b, CD11c, and CD54, and analyzed by flow cytometry. For oxidative burst and CD62L shedding analysis, CD16 and CD62L stained leukocytes were loaded with Dihydrorhodamine-123 (DHR-123) and stimulated with N-Formylmethionine-leucyl-phenylalanine (fMLF). Neutrophil subsets were characterized based on CD16 and CD62L expression. Marker surface expression was recorded on CD16+ neutrophils as median fluorescence intensity (MFI). Results: Neutrophil surface expression of CD62L was significantly reduced in COPD (median (IQR) MFI: 1156 (904, 1365)) compared with asthma (1865 (1157, 2408)) and healthy controls (2079 (1054, 2960)); p=0.028. COPD neutrophils also demonstrated a significant reduction in CD62L expression with and without fMLF stimulation. Asthma participants had a significantly increased proportion and number of CD62Lbright/CD16dim neutrophils (median: 5.4% and 0.14 × 109/L, respectively), in comparison with healthy (3.54% and 0.12 × 109/L, respectively); p<0.017. Conclusion: Reduced CD62L expression suggests blood neutrophils have undergone priming in COPD but not in asthma, which may be the result of systemic inflammation. The increased shedding of CD62L receptor by COPD blood neutrophils suggests a high sensitivity for activation.

DOI 10.2147/COPD.S222486
Citations Scopus - 1Web of Science - 9
Co-authors Daniel Barker, Peter Wark, Jodie Simpson, Michael Fricker
2019 McLoughlin R, Berthon BS, Rogers GB, Baines KJ, Leong LEX, Gibson PG, Williams EJ, Wood LG, 'Soluble fibre supplementation with and without a probiotic in adults with asthma: A 7-day randomised, double blind, three way cross-over trial', EBIOMEDICINE, 46, 473-485 (2019) [C1]

Background: Soluble fibre modulates airway inflammation in animal models. The aim of this study was to investigate the effects of soluble fibre supplementation, with an... [more]

Background: Soluble fibre modulates airway inflammation in animal models. The aim of this study was to investigate the effects of soluble fibre supplementation, with and without a probiotic, on plasma short chain fatty acids (SCFA), airway inflammation, asthma control and gut microbiome in adults with asthma. Methods: A randomised, double-blinded, placebo controlled 3-way cross-over trial in 17 subjects with stable asthma at the Hunter Medical Research Institute, Newcastle, Australia. Subjects received 3 × 7 day oral interventions in random order; soluble fibre (inulin 12 g/day), soluble fibre + probiotic (inulin 12 g/day + multi-strain probiotic >25 billion CFU) and placebo. Plasma SCFA, sputum cell counts and inflammatory gene expression, asthma control gut microbiota, adverse events including gastrointestinal symptoms were measured. Findings: There was no difference in change in total plasma SCFA levels (µmol/L) in the placebo versus soluble fibre (¿median [95% CI] 16·3 [-16·9, 49·5], p = 0·335) or soluble fibre+probiotic (18·7 [-14·5, 51·9], p = 0·325) group. Following the soluble fibre intervention there was an improvement in the asthma control questionnaire (ACQ6) (¿median (IQR) -0·35 (-0·5, -0·13), p = 0·006), sputum %eosinophils decreased (-1.0 (-2·5, 0), p = 0·006) and sputum histone deacetylase 9 (HDAC9) gene expression decreased (-0.49 (-0.83, -0.27) 2-¿Ct, p =.008). Individual bacterial operational taxonomic units changed following both inulin and inulin+probiotic arms. Interpretation: Soluble fibre supplementation for 7 days in adults with asthma did not change SCFA levels. Within group analysis showed improvements in airway inflammation, asthma control and gut microbiome composition following inulin supplementation and these changes warrant further investigation, in order to evaluate the potential of soluble fibre as a non-pharmacological addition to asthma management. Fund: John Hunter Hospital Charitable Trust.

DOI 10.1016/j.ebiom.2019.07.048
Citations Scopus - 8Web of Science - 73
Co-authors Evan J Williams, Peter Gibson, Bec Mcloughlin, Bronwyn Berthon, Lisa Wood
2018 Chen AC-H, Tran HB, Xi Y, Yerkovich ST, Baines KJ, Pizzutto SJ, Carroll M, Robertson AAB, Cooper MA, Schroder K, Simpson JL, Gibson PG, Hodge G, Masters IB, Buntain HM, Petsky HL, Prime SJ, Chang AB, Hodge S, Upham JW, 'Multiple inflammasomes may regulate the interleukin-1-driven inflammation in protracted bacterial bronchitis.', ERJ open research, 4, 1-11 (2018) [C1]
DOI 10.1183/23120541.00130-2017
Citations Scopus - 2Web of Science - 6
Co-authors Jodie Simpson, Peter Gibson
2018 Periyalil HA, Wood LG, Wright TA, Karihaloo C, Starkey MR, Miu AS, Baines KJ, Hansbro PM, Gibson PG, 'Obese asthmatics are characterized by altered adipose tissue macrophage activation', CLINICAL AND EXPERIMENTAL ALLERGY, 48, 641-649 (2018) [C1]
DOI 10.1111/cea.13109
Citations Scopus - 4Web of Science - 45
Co-authors Peter Gibson, Lisa Wood
2018 Baines KJ, Wright TK, Gibson PG, Powell H, Hansbro PM, Simpson JL, 'Azithromycin treatment modifies airway and blood gene expression networks in neutrophilic COPD.', ERJ open research, 4 (2018) [C1]
DOI 10.1183/23120541.00031-2018
Citations Scopus - 1Web of Science - 1
Co-authors Peter Gibson, Jodie Simpson
2018 Porsbjerg C, Sverrild A, Baines KJ, Searles A, Maltby S, Foster PS, Brightling C, Gibson PG, 'Advancing the management of obstructive airways diseases through translational research', CLINICAL AND EXPERIMENTAL ALLERGY, 48, 493-501 (2018) [C1]
DOI 10.1111/cea.13112
Citations Scopus - 1
Co-authors Peter Gibson, Steven Maltby
2018 Chen AC-H, Pena OM, Nel HJ, Yerkovich ST, Chang AB, Baines KJ, Gibson PG, Petsky HL, Pizzutto SJ, Hodge S, Masters IB, Buntain HL, Upham JW, 'Airway cells from protracted bacterial bronchitis and bronchiectasis share similar gene expression profiles', PEDIATRIC PULMONOLOGY, 53, 575-582 (2018) [C1]

Aim: Protracted bacterial bronchitis (PBB) is a common cause of prolonged cough in young children, and may be a precursor of bronchiectasis. Bacteria are often present ... [more]

Aim: Protracted bacterial bronchitis (PBB) is a common cause of prolonged cough in young children, and may be a precursor of bronchiectasis. Bacteria are often present in the lower airways in both PBB and bronchiectasis and may cause persistent infections. However, there is a paucity of information available on the pathogenesis of PBB and the factors associated with persistent bacterial infection and progression to bronchiectasis. This study hypothesised that lung immune cells in recurrent PBB and bronchiectasis differentially express genes related to immune cell dysfunction compared to lung immune cells from control subjects. Method: Cells isolated from bronchoalveolar lavage (adult-control and PBB BAL cells) were stimulated with nontypeable Haemophilus influenzae (NTHi), and expression of genes involved in various inflammatory pathways was assessed. Result: NTHi induced production of large amounts of IL-1ß, IL-6, and IL-8 in adult-control BAL cells, however BAL cells from PBB airways appeared refractory to NTHi stimulation. BAL cells from PBB and bronchiectasis showed differential expression of several genes relative to control cells, including CCL20, MARCO, CCL24, IL-10, PPAR-¿, CD200R, TREM2, RelB. Expression of genes involved in resolution of inflammation and anti-inflammation response, such as CD200R and IL-10, was associated with the number of pathogenic bacteria found in the airways. Conclusion: In summary, we have shown that the expression of genes related to macrophage function and resolution of inflammation are similar in PBB and bronchiectasis. Lung immune cell dysfunction in PBB and bronchiectasis may contribute to poor bacterial clearance and prolonged resolution of inflammation.

DOI 10.1002/ppul.23984
Citations Scopus - 1Web of Science - 16
Co-authors Peter Gibson
2017 Chen ACH, Xi Y, Carroll M, Petsky HL, Gardiner SJ, Pizzutto SJ, Yerkovich ST, Baines KJ, Gibson PG, Hodge S, Masters IB, Buntain HM, Chang AB, Upham JW, 'Cytokine responses to two common respiratory pathogens in children are dependent on interleukin-1ß', ERS Monograph, 3 (2017)

© 2015 Macmillan Publishers Ltd. Protracted bacterial bronchitis (PBB) in young children is a common cause of prolonged wet cough and may be a precursor to bronchiectas... [more]

© 2015 Macmillan Publishers Ltd. Protracted bacterial bronchitis (PBB) in young children is a common cause of prolonged wet cough and may be a precursor to bronchiectasis in some children. Although PBB and bronchiectasis are both characterised by neutrophilic airway inflammation and a prominent interleukin (IL)-1ß signature, the contribution of the IL-1ß pathway to host defence is not clear. This study aimed to compare systemic immune responses against common pathogens in children with PBB, bronchiectasis and control children and to determine the importance of the IL-1ß pathway. Non-typeable Haemophilus influenzae (NTHi) stimulation of peripheral blood mononuclear cells (PBMCs) from control subjects (n=20), those with recurrent PBB (n=20) and bronchiectasis (n=20) induced high concentrations of IL-1ß, IL-6, interferon (IFN)-¿ and IL-10. Blocking with an IL-1 receptor antagonist (IL-1Ra) modified the cellular response to pathogens, inhibiting cytokine synthesis by NTHistimulated PBMCs and rhinovirus-stimulated PBMCs (in a separate PBB cohort). Inhibition of IFN-¿ production by IL-1Ra was observed across multiple cell types, including CD3+T cells and CD56+NK cells. Our findings highlight the extent to which IL-1ß regulates the cellular immune response against two common respiratory pathogens. While blocking the IL-1ß pathway has the potential to reduce inflammation, this may come at the cost of protective immunity against NTHi and rhinovirus.

DOI 10.1183/23120541.00025-2017
Citations Scopus - 1
2017 McLoughlin RF, Berthon BS, Jensen ME, Baines KJ, Wood LG, 'Short-chain fatty acids, prebiotics, synbiotics, and systemic inflammation: a systematic review and meta-analysis', AMERICAN JOURNAL OF CLINICAL NUTRITION, 106, 930-945 (2017) [C1]

Background: Prebiotic soluble fibers are fermented by beneficial bacteria in the colon to produce short-chain fatty acids (SCFAs), which are proposed to have systemic a... [more]

Background: Prebiotic soluble fibers are fermented by beneficial bacteria in the colon to produce short-chain fatty acids (SCFAs), which are proposed to have systemic anti-inflammatory effects. Objective: This review examines the effect of SCFAs, prebiotics, and pre- and probiotic combinations (synbiotics) on systemic inflammation. Design: Relevant English language studies from 1947 to May 2017 were identified with the use of online databases. Studies were considered eligible if they examined the effects of SCFAs, prebiotics, or synbiotics; were delivered orally, intravenously, or per rectum; were on biomarkers of systemic inflammation in humans; and performed meta-analysis where possible. Results: Sixty-eight studies were included. Fourteen of 29 prebiotic studies and 13 of 26 synbiotic studies reported a significant decrease in =1 marker of systemic inflammation. Eight studies compared prebiotic and synbiotic supplementation, 2 of which reported a decrease in inflammation with synbiotics only, with 1 reporting a greater anti-inflammatory effect with synbiotics than with prebiotics alone. Meta-analyses indicated that prebiotics reduce C-reactive protein (CRP) [standardized mean difference (SMD): -0.60; 95% CI: -0.98, -0.23], and synbiotics reduce CRP (SMD: -0.40; 95% CI: -0.73, -0.06) and tumor necrosis factor-a (SMD -0.90; 95% CI: -1.50, -0.30). Conclusions: There is significant heterogeneity of outcomes in studies examining the effect of prebiotics and synbiotics on systemic inflammation. Approximately 50% of included studies reported a decrease in =1 inflammatory biomarker. The inconsistency in reported outcomes may be due to heterogeneity in study design, supplement formulation, dosage, duration, and subject population. Nonetheless, meta-analyses provide evidence to support the systemic anti-inflammatory effects of prebiotic and synbiotic supplementation.

DOI 10.3945/ajcn.117.156265
Citations Scopus - 2Web of Science - 191
Co-authors Megan Jensen, Lisa Wood, Bronwyn Berthon, Bec Mcloughlin
2017 Halnes I, Baines KJ, Berthon BS, MacDonald-Wicks LK, Gibson PG, Wood LG, 'Soluble fibre meal challenge reduces airway inflammation and expression of GPR43 and GPR41 in asthma', Nutrients, 9, 1-11 (2017) [C1]
DOI 10.3390/nu9010057
Citations Scopus - 1Web of Science - 1
Co-authors Lesley Wicks, Bronwyn Berthon, Lisa Wood, Peter Gibson
2017 Williams EJ, Baines KJ, Berthon BS, Wood LG, 'Effects of an Encapsulated Fruit and Vegetable Juice Concentrate on Obesity-Induced Systemic Inflammation: A Randomised Controlled Trial', NUTRIENTS, 9 (2017) [C1]
DOI 10.3390/nu9020116
Citations Scopus - 3Web of Science - 26
Co-authors Evan J Williams, Lisa Wood, Bronwyn Berthon
2017 Pabreja K, Gibson P, Lochrin AJ, Wood L, Baines KJ, Simpson JL, 'Sputum colour can identify patients with neutrophilic inflammation in asthma', BMJ OPEN RESPIRATORY RESEARCH, 4 (2017) [C1]

Introduction Sputum colour is associated with neutrophilic inflammation in chronic bronchitis and chronic obstructive pulmonary disease (COPD). Neutrophilia and sputum ... [more]

Introduction Sputum colour is associated with neutrophilic inflammation in chronic bronchitis and chronic obstructive pulmonary disease (COPD). Neutrophilia and sputum expectoration is notable in asthma, but whether sputum colour is associated with and predicts the presence of neutrophilic inflammation in asthma is unknown. The objective of the study is to assess the ability of sputum colour in distinguishing asthma inflammatory phenotypes. Methods Induced sputum samples collected from 271 adults with stable asthma were retrospectively assessed. Sputum colour was determined using the BronkoTest sputum colour chart and correlated to differential cell counts and CXCL-8 concentration. Neutrophilic inflammation was defined as an age-corrected sputum neutrophil proportion (=61.6% for age 20¿40 years; =63.2% for age 40¿60 and =67.2% for age >60 years), whereas neutrophilic bronchitis (NB) was defined as high total cell count (=5.1×106 cells/mL) plus an increased age-corrected neutrophil proportion. The optimal cut-off for sputum colour to predict neutrophilic inflammation and NB was determined using receiver operator characteristic curve analysis. Results A sputum colour score of =3 represented and predicted neutrophilic inflammation with modest accuracy (area under the curve (AUC)=0.64; p<0.001, specificity=78.4%, sensitivity=49.2%). Participants with a sputum colour score of =3 had significantly (p<0.05) higher CXCL-8, total cells and neutrophil number and proportion. Sputum colour score was also positively correlated with these factors. Sputum colour score =3 predicted NB with reasonably good accuracy (AUC=0.79, p<0.001, specificity=79.3%, sensitivity=70.7%). Conclusions Visual gradation of sputum colour in asthma relates to high total cell count and neutrophilic inflammation. Assessment of sputum colour can identify adults with asthma who are likely to have NB without the need for sputum processing and differential cell count, which may facilitate asthma management.

DOI 10.1136/bmjresp-2017-000236
Citations Scopus - 1Web of Science - 10
Co-authors Jodie Simpson, Peter Gibson, Lisa Wood
2017 Baines KJ, Fu J-J, McDonald VM, Gibson PG, 'Airway gene expression of IL-1 pathway mediators predicts exacerbation risk in obstructive airway disease', INTERNATIONAL JOURNAL OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE, 12, 541-550 (2017) [C1]

Background: Exacerbations of asthma and COPD are a major cause of morbidity and mortality and are responsible for significant health care costs. This study further inve... [more]

Background: Exacerbations of asthma and COPD are a major cause of morbidity and mortality and are responsible for significant health care costs. This study further investigates interleukin (IL)-1 pathway activation and its relationship with exacerbations of asthma and COPD. Methods: In this prospective cohort study, 95 participants with stable asthma (n=35) or COPD (n=60) were recruited and exacerbations recorded over the following 12 months. Gene expressions of IL-1 pathway biomarkers, including the IL-1 receptors (IL1R1, IL1R2, and IL1RN), and signaling molecules (IRAK2, IRAK3, and PELI1), were measured in sputum using real-time quantitative polymerase chain reaction. Mediators were compared between the frequent (2 exacerbations in the 12 months) and infrequent exacerbators, and the predictive relationships investigated using receiver operating characteristic curves and area under the curve (AUC) values. Results: Of the 95 participants, 89 completed the exacerbation follow-up, where 30 participants (n=22 COPD, n=8 asthma) had two or more exacerbations. At the baseline visit, expressions of IRAK2, IRAK3, PELI1, and IL1R1 were elevated in participants with frequent exacerbations of both asthma and COPD combined and separately. In the combined population, sputum gene expression of IRAK3 (AUC=75.4%; P,0.001) was the best predictor of future frequent exacerbations, followed by IL1R1 (AUC=72.8%; P,0.001), PELI1 (AUC=71.2%; P,0.001), and IRAK2 (AUC=68.6; P=0.004). High IL-1 pathway gene expression was associated with frequent prior year exacerbations and correlated with the number and severity of exacerbations. Conclusion: The upregulation of IL-1 pathway mediators is associated with frequent exacerbations of obstructive airway disease. Further studies should investigate these mediators as both potential diagnostic biomarkers predicting at-risk patients and novel treatment targets.

DOI 10.2147/COPD.S119443
Citations Scopus - 2Web of Science - 26
Co-authors Vanessa Mcdonald, Peter Gibson
2017 Berthon BS, Gibson PG, Wood LG, MacDonald-Wicks LK, Baines KJ, 'A sputum gene expression signature predicts oral corticosteroid response in asthma', EUROPEAN RESPIRATORY JOURNAL, 49 (2017) [C1]
DOI 10.1183/13993003.00180-2017
Citations Scopus - 5Web of Science - 53
Co-authors Lisa Wood, Peter Gibson, Bronwyn Berthon, Lesley Wicks
2017 Kim RY, Pinkerton JW, Essilfie AT, Robertson AAB, Baines KJ, Brown AC, Mayall JR, Ali MK, Starkey MR, Hansbro NG, Hirota JA, Wood LG, Simpson JL, Knight DA, Wark PA, Gibson PG, O'Neill LAJ, Cooper MA, Horvat JC, Hansbro PM, 'Role for NLRP3 Inflammasome-mediated, IL-1ß-Dependent Responses in Severe, Steroid-Resistant Asthma', AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 196, 283-297 (2017) [C1]

Rationale: Severe, steroid-resistant asthma is the major unmet need in asthma therapy. Disease heterogeneity and poor understanding of pathogenic mechanisms hampers the... [more]

Rationale: Severe, steroid-resistant asthma is the major unmet need in asthma therapy. Disease heterogeneity and poor understanding of pathogenic mechanisms hampers the identification of therapeutic targets. Excessive nucleotide-binding oligomerization domain-like receptor family, pyrin domain-containing 3 (NLRP3) inflammasome and concomitant IL-1ß responses occur in chronic obstructive pulmonary disease, respiratory infections, and neutrophilic asthma. However, the direct contributions to pathogenesis, mechanisms involved, and potential for therapeutic targeting remain poorly understood, and are unknown in severe, steroid-resistant asthma. Objectives: To investigate the roles and therapeutic targeting of the NLRP3 inflammasome and IL-1ß in severe, steroid-resistant asthma. Methods: We developed mouse models of Chlamydia and Haemophilus respiratory infection-mediated, ovalbumin-induced severe, steroid-resistant allergic airway disease. These models share the hallmark features of human disease, including elevated airway neutrophils, and NLRP3 inflammasome and IL-1ß responses. The roles and potential for targeting of NLRP3 inflammasome, caspase-1, and IL-1ß responses in experimental severe, steroid-resistant asthma were examined using a highly selective NLRP3 inhibitor, MCC950; the specific caspase-1 inhibitor Ac-YVAD-cho; and neutralizing anti-IL-1ß antibody. Roles for IL-1ß-induced neutrophilic inflammation were examined using IL-1ß and anti-Ly6G. Measurements and Main Results: Chlamydia and Haemophilus infections increase NLRP3, caspase-1, IL-1ß responses that drive steroid-resistant neutrophilic inflammation and airway hyperresponsiveness. Neutrophilic airway inflammation, disease severity, and steroid resistance in human asthma correlate with NLRP3 and IL-1ß expression. Treatment with anti-IL-1ß, Ac- YVAD-cho, and MCC950 suppressed IL-1ß responses and the important steroid-resistant features of disease in mice, whereas IL-1ß administration recapitulated these features. Neutrophil depletion suppressed IL-1ß-induced steroid-resistant airway hyperresponsiveness. Conclusions: NLRP3 inflammasome responses drive experimental severe, steroid-resistant asthma and are potential therapeutic targets in this disease.

DOI 10.1164/rccm.201609-1830OC
Citations Scopus - 3Web of Science - 307
Co-authors Alexandra Brown, Peter Gibson, Peter Wark, Jodie Simpson, Lisa Wood, Jemma Mayall, Jay Horvat
2017 Chen ACH, Xi Y, Carroll M, Petsky HL, Gardiner SJ, Pizzutto SJ, Yerkovich ST, Baines KJ, Gibson PG, Hodge S, Masters IB, Buntain HM, Chang AB, Upham JW, 'Cytokine responses to two common respiratory pathogens in children are dependent on interleukin-1ß', ERJ Open Research, 3 (2017) [C1]
DOI 10.1183/23120541.00025-2017
Citations Scopus - 7
Co-authors Peter Gibson
2017 Hsu A, Dua K, Starkey MR, Haw TJ, Nair PM, Nichol K, Zammit N, Grey ST, Baines KJ, Foster P, Hansbro PM, Wark P, 'MicroRNA-125a and -b inhibit A20 and MAVS to promote inflammation and impair antiviral response in COPD', JOURNAL OF CLINICAL INVESTIGATION (JCI) Insight (2017) [C1]
DOI 10.1172/jci.insight.90443
Citations Scopus - 1Web of Science - 9
Co-authors Alan Hsu, Peter Wark, Tattjhong Haw
2016 Li Q, Baines KJ, Gibson PG, Wood LG, 'Changes in expression of genes regulating airway inflammation following a high-fat mixed meal in asthmatics', Nutrients, 8 (2016) [C1]

Consumption of a high fat meal can increase neutrophilic airway inflammation in asthma subjects. This study investigates the molecular mechanisms driving airway neutrop... [more]

Consumption of a high fat meal can increase neutrophilic airway inflammation in asthma subjects. This study investigates the molecular mechanisms driving airway neutrophilia following a high fat meal in asthmatics. Subjects with asthma (n = 11) and healthy controls (n = 8) consumed a high-fat/energy meal, containing total energy (TE) of 3846 kJ and 48 g of total fat (20.5 g saturated). Sputum was induced at 0 and 4 h, and gene expression was examined by microarray and quantitative real-time PCR (qPCR). Following the high fat dietary challenge, 168 entities were significantly differentially expressed greater than >1.5 fold in subjects with asthma, whereas, in healthy controls, only 14 entities were differentially expressed. Of the 168 genes that were changed in asthma, several biological processes were overrepresented, with 25 genes involved in "immune system processes". qPCR confirmed that S100P, S100A16, MAL and MUC1 were significantly increased in the asthma group post-meal. We also observed a strong correlation and a moderate correlation between the change in NLRP12 and S100A16 gene expression at 4 h compared to baseline, and the change in total and saturated non-esterified plasma fatty acid levels at 2 h compared to baseline. In summary, our data identifies differences in inflammatory gene expression that may contribute to increased airway neutrophilia following a high fat meal in subjects with asthma and may provide useful therapeutic targets for immunomodulation. This may be particularly relevant to obese asthmatics, who are habitually consuming diets with a high fat content.

DOI 10.3390/nu8010030
Citations Scopus - 3Web of Science - 2
Co-authors Lisa Wood, Peter Gibson
2016 Wang G, Baines KJ, Fu JJ, Wood LG, Simpson JL, McDonald VM, Cowan DC, Taylor DR, Cowan JO, Gibson PG, 'Sputum mast cell subtypes relate to eosinophilia and corticosteroid response in asthma', EUROPEAN RESPIRATORY JOURNAL, 47, 1123-1133 (2016) [C1]

Mast cells are a resident inflammatory cell of the airways, involved in both the innate and adaptive immune response. The relationship between mast cells and inflammato... [more]

Mast cells are a resident inflammatory cell of the airways, involved in both the innate and adaptive immune response. The relationship between mast cells and inflammatory phenotypes and treatment response of asthma is not clear. Clinical characteristics of subjects with stable asthma (n=55), inflammatory cell counts and gene expression microarrays in induced sputum were analysed. Sputum mast cell subtypes were determined by molecular phenotyping based on expression of mast cell biomarkers (tryptase (TPSAB1), chymase (CMA1) and carboxypeptidase A3 (CPA3)). Effects of mast cell subtypes on steroid response were observed in a prospective cohort study (n=50). MCT (n=18) and MCT/CPA3 (mRNA expression of TPSAB1 and CPA3; n=29) subtypes were identified, as well as a group without mast cell gene expression (n=8). The MCT/CPA3 subtype had elevated exhaled nitric oxide fraction, sputum eosinophils, bronchial sensitivity and reactivity, and poorer asthma control. This was accompanied by upregulation of 13 genes. Multivariable logistic regression identified CPA3 (OR 1.21, p=0.004) rather than TPSAB1 (OR 0.92, p=0.502) as a determinant of eosinophilic asthma. The MCT/CPA3 subtype had a better clinical response and reduced signature gene expression with corticosteroid treatment. Sputum mast cell subtypes of asthma can be defined by a molecular phenotyping approach. The MCT/CPA3 subtype demonstrated increased bronchial sensitivity and reactivity, and signature gene expression, which was associated with airway eosinophilia and greater corticosteroid responsiveness.

DOI 10.1183/13993003.01098-2015
Citations Scopus - 7Web of Science - 71
Co-authors Jodie Simpson, Vanessa Mcdonald, Peter Gibson, Lisa Wood
2016 Tang FSM, Van Ly D, Spann K, Reading PC, Burgess JK, Hartl D, Baines KJ, Oliver BG, 'Differential neutrophil activation in viral infections: Enhanced TLR-7/8-mediated CXCL8 release in asthma', RESPIROLOGY, 21, 172-179 (2016) [C1]

© 2015 The Authors. Respirology published by Wiley Publishing Asia Pty Ltd on behalf of Asian Pacific Society of Respirology.Background and objective Respiratory viral ... [more]

© 2015 The Authors. Respirology published by Wiley Publishing Asia Pty Ltd on behalf of Asian Pacific Society of Respirology.Background and objective Respiratory viral infections are a major cause of asthma exacerbations. Neutrophils accumulate in the airways and the mechanisms that link neutrophilic inflammation, viral infections and exacerbations are unclear. This study aims to investigate anti-viral responses in neutrophils from patients with and without asthma and to investigate if neutrophils can be directly activated by respiratory viruses. Methods Neutrophils from peripheral blood from asthmatic and non-asthmatic individuals were isolated and stimulated with lipopolysaccharide (LPS) (1 µg/mL), f-met-leu-phe (fMLP) (100 nM), imiquimod (3 µg/mL), R848 (1.5 µg/mL), poly I:C (10 µg/mL), RV16 (multiplicity of infection (MOI)1), respiratory syncytial virus (RSV) (MOI1) or influenza virus (MOI1). Cell-free supernatants were collected after 1 h of neutrophil elastase (NE) and matrix metalloproteinase (MMP)-9 release, or after 24 h for CXCL8 release. Results LPS, fMLP, imiquimod and R848 stimulated the release of CXCL8, NE and MMP-9 whereas poly I:C selectively induced CXCL8 release only. R848-induced CXCL8 release was enhanced in neutrophils from asthmatics compared with non-asthmatic cells (P < 0.01). RSV triggered the release of CXCL8 and NE from neutrophils, whereas RV16 or influenza had no effect. Conclusion Neutrophils release CXCL8, NE and MMP-9 in response to viral surrogates with R848-induced CXCL8 release being specifically enhanced in asthmatic neutrophils. Toll-like receptor (TLR7/8) dysregulation may play a role in neutrophilic inflammation in viral-induced exacerbations. We aimed to investigate and compare neutrophil responses to bacterial compounds and viral mimetics as well as compare responses between people with and without asthma. We also investigated neutrophil responses to live respiratory viruses. Here we provide a novel comprehensive comparison showing differential and specific activation in innate immune cells. See Editorial, page 10

DOI 10.1111/resp.12657
Citations Scopus - 4Web of Science - 44
2016 Simpson JL, Baines KJ, Horvat JC, Essilfie A-T, Brown AC, Tooze M, McDonald VM, Gibson PG, Hansbro PM, 'COPD is characterized by increased detection of Haemophilus influenzae, Streptococcus pneumoniae and a deficiency of Bacillus species', RESPIROLOGY, 21, 697-704 (2016) [C1]

Background and objective Chronic obstructive pulmonary disease (COPD) is characterized by progressive airflow limitation and inflammation. Airway bacterial colonization... [more]

Background and objective Chronic obstructive pulmonary disease (COPD) is characterized by progressive airflow limitation and inflammation. Airway bacterial colonization is increased in COPD; however, the role of potentially pathogenic and non-pathogenic bacteria in the pathogenesis of disease is unclear. This study characterized the presence of bacteria in a well-characterized cohort of adults with COPD and healthy controls. Methods Adults with COPD (n = 70) and healthy controls (n = 51) underwent clinical assessment and sputum induction. Sputum was dispersed, and total and differential cell counts were performed. Bacteria were cultured, identified and enumerated. Supernatants were assessed for neutrophil elastase (NE) and IL-1ß. Common respiratory pathogens were also determined using real-time PCR. Results Participants with COPD had a typical neutrophilic inflammatory profile. The total load of bacteria was increased in COPD and was associated with poorer respiratory health status, as measured by the St George's Respiratory Questionnaire (Spearman's r = 0.336, P = 0.013). Significantly lower levels of culturable Bacillus species were identified compared with healthy controls. PCR analyses revealed increased rates of detection of potentially pathogenic bacteria with Haemophilus influenzae detection associated with higher sputum levels of NE and IL-1ß, while Streptococcus pneumoniae was more common in male ex-smokers with emphysema and a deficit in diffusion capacity. Conclusion Non-pathogenic and pathogenic bacteria were altered in the sputum of patients with COPD. These observations highlight the potential to identify treatment and management strategies that both target specific bacterial pathogens and restore the microbial balance, which may lead to reductions in inflammation and subsequent improvements in lung health.

DOI 10.1111/resp.12734
Citations Scopus - 5Web of Science - 51
Co-authors Peter Gibson, Alexandra Brown, Vanessa Mcdonald, Jay Horvat, Jodie Simpson
2016 Sverrild A, Bergqvist A, Baines KJ, Porsbjerg C, Andersson CK, Thomsen SF, Hoffmann HJ, Gibson P, Erjefalt JS, Backer V, 'Airway responsiveness to mannitol in asthma is associated with chymase-positive mast cells and eosinophilic airway inflammation', CLINICAL AND EXPERIMENTAL ALLERGY, 46, 288-297 (2016) [C1]

Background: Airway hyperresponsiveness (AHR) to inhaled mannitol is associated with indirect markers of mast cell activation and eosinophilic airway inflammation. It is... [more]

Background: Airway hyperresponsiveness (AHR) to inhaled mannitol is associated with indirect markers of mast cell activation and eosinophilic airway inflammation. It is unknown how AHR to mannitol relates to mast cell phenotype, mast cell function and measures of eosinophilic inflammation in airway tissue. We compared the number and phenotype of mast cells, mRNA expression of mast cell-associated genes and number of eosinophils in airway tissue of subjects with asthma and healthy controls in relation to AHR to mannitol. Methods: Airway hyperresponsiveness to inhaled mannitol was measured in 23 non-smoking, corticosteroid-free asthmatic individuals and 10 healthy controls. Mast cells and eosinophils were identified in mucosal biopsies from all participants. Mast cells were divided into phenotypes based on the presence of chymase. mRNA expression of mast cell-associated genes was measured by real-time PCR. Results: The proportion of submucosal MCTC was higher in asthmatic individuals with AHR to mannitol compared with asthmatic individuals without AHR (median: 40.3% vs. 18.7%, P=0.03). Increased submucosal MCTC numbers were associated with increased levels of mRNA for thymic stromal lymphopoietin (TSLP) and CPA3 in asthmatics. Reactivity to mannitol correlated significantly with eosinophils in submucosa (r(s): 0.56, P=0.01). Conclusion: Airway hyperresponsiveness to inhaled mannitol is associated with an altered submucosal mast cell profile in asthmatic individuals. This mast cell profile is associated with increased levels of TSLP and CPA3. The degree of AHR to mannitol is correlated with the degree of eosinophilic inflammation in the airway submucosa.

DOI 10.1111/cea.12609
Citations Scopus - 4Web of Science - 2
Co-authors Peter Gibson
2016 Thi HN, Maltby S, Simpson JL, Eyers F, Baines KJ, Gibson PG, Foster PS, Yang M, 'TNF-a and Macrophages Are Critical for Respiratory Syncytial Virus-Induced Exacerbations in a Mouse Model of Allergic Airways Disease', JOURNAL OF IMMUNOLOGY, 196, 3547-3558 (2016) [C1]

Viral respiratory infections trigger severe exacerbations of asthma, worsen disease symptoms, and impair lung function. To investigate the mechanisms underlying viral e... [more]

Viral respiratory infections trigger severe exacerbations of asthma, worsen disease symptoms, and impair lung function. To investigate the mechanisms underlying viral exacerbation, we established a mouse model of respiratory syncytial virus (RSV)-induced exacerbation after allergen sensitization and challenge. RSV infection of OVA-sensitized/challenged BALB/c mice resulted in significantly increased airway hyperresponsiveness (AHR) and macrophage and neutrophil lung infiltration. Exacerbation was accompanied by increased levels of inflammatory cytokines (including TNF-a, MCP-1, and keratinocyte-derived protein chemokine [KC]) compared with uninfected OVA-treated mice or OVA-treated mice exposed to UV-inactivated RSV. Dexamethasone treatment completely inhibited all features of allergic disease, including AHR and eosinophil infiltration, in uninfected OVAsensitized/challenged mice. Conversely, dexamethasone treatment following RSV-induced exacerbation only partially suppressed AHR and failed to dampen macrophage and neutrophil infiltration or inflammatory cytokine production (TNF-a, MCP-1, and KC). This mimics clinical observations in patients with exacerbations, which is associated with increased neutrophils and often poorly responds to corticosteroid therapy. Interestingly, we also observed increased TNF-a levels in sputum samples from patients with neutrophilic asthma. Although RSV-induced exacerbation was resistant to steroid treatment, inhibition of TNF-a and MCP-1 function or depletion of macrophages suppressed features of disease, including AHR and macrophage and neutrophil infiltration. Our findings highlight critical roles for macrophages and inflammatory cytokines (including TNF-a and MCP-1) in viral-induced exacerbation of asthma and suggest examination of these pathways as novel therapeutic approaches for disease management.

DOI 10.4049/jimmunol.1502339
Citations Scopus - 5Web of Science - 55
Co-authors Ming Yang, Peter Gibson, Steven Maltby, Jodie Simpson
2016 Wright TK, Gibson PG, Simpson JL, McDonald VM, Wood LG, Baines KJ, 'Neutrophil extracellular traps are associated with inflammation in chronic airway disease', RESPIROLOGY, 21, 467-475 (2016) [C1]

Background and objective Neutrophil extracellular traps (NETs) are web-like structures comprising DNA and antimicrobial proteins, expelled from neutrophils during NETos... [more]

Background and objective Neutrophil extracellular traps (NETs) are web-like structures comprising DNA and antimicrobial proteins, expelled from neutrophils during NETosis. Persistence of NETs can be pro-inflammatory, yet their role in respiratory disease remains unclear. This study aimed to investigate the presence of NETs in sputum from patients with asthma and COPD, and the relationship of NETs with inflammatory phenotype and disease severity. Methods Induced sputum was collected from healthy controls, asthma and COPD patients. Extracellular DNA (eDNA) was quantified by PicoGreen. LL-37, a-defensins1-3, NE, IL-1ß and CXCL8 were quantified by ELISA. PAD4 and NLRP3 gene expression was performed using qPCR. NETs were imaged in sputum smears using immunofluorescence microscopy. Results Sputum eDNA and NET neutrophil antimicrobial proteins were significantly elevated in asthma and COPD compared with healthy controls. Levels of eDNA and NET components were significantly higher in neutrophilic versus non-neutrophilic asthma and COPD. NETs were clearly visualized in sputum smears. PAD4 mRNA was upregulated in neutrophilic COPD. The level of eDNA was higher in severe asthma. High eDNA levels were associated with heightened innate immune responses, including elevated CXCL8 and IL-1ß, and NLRP3 gene expression in both COPD and asthma. Antimicrobial proteins and eDNA were positively correlated with airway neutrophils, and negatively correlated with lung function and symptoms. Conclusion NETs are present in the airways of subjects with asthma and COPD. Accumulation of excessive NETs was associated with activation of innate immune responses contributing to disease pathogenesis in chronic airway disease.

DOI 10.1111/resp.12730
Citations Scopus - 1Web of Science - 144
Co-authors Lisa Wood, Vanessa Mcdonald, Peter Gibson, Jodie Simpson
2016 Tang FSM, Hansbro PM, Burgess JK, Ammit AJ, Baines KJ, Oliver BG, 'A novel immunomodulatory function of neutrophils on rhinovirus-activated monocytes in vitro', THORAX, 71, 1039-1049 (2016) [C1]

Background Rhinovirus (RV) infections are the major precipitant of asthma exacerbations. While neutrophilic lung inflammation occurs during such infections, its role re... [more]

Background Rhinovirus (RV) infections are the major precipitant of asthma exacerbations. While neutrophilic lung inflammation occurs during such infections, its role remains unclear. Neutrophilic inflammation is associated with increased asthma severity and steroid refractory disease. Neutrophils are vital for controlling infections but also have immunomodulatory functions. Previously, we found that neutrophils respond to viral mimetics but not replication competent RV. We aimed to investigate if neutrophils are activated and/or modulate immune responses of monocytes during RV16 infection. Methods Primary human monocytes and autologous neutrophils were cocultured with or without RV16, in direct contact or separated by transwells. RV16-stimulated monocytes were also exposed to lysed neutrophils, neutrophil membrane components or soluble neutrophil intracellular components. Interleukin 6 (IL-6) and C-X-C motif (CXC)L8 mRNA and proteins were measured by quantitative PCR and ELISA at 24â ¿..hours. Results RV16 induced IL-6 and CXCL8 in monocytes, but not neutrophils. RV16-induced IL-6 and CXCL8 from monocytes was reduced in the presence of live neutrophils. Transwell separation abolished the inhibitory effects. Lysed neutrophils inhibited RV16-induced IL-6 and CXCL8 from monocytes. Neutrophil intracellular components alone effectively inhibited RV16-induced monocyte-derived IL-6 and CXCL8. Neutrophil intracellular components reduced RV16-induced IL-6 and CXCL8 mRNA in monocytes. Conclusions Cell contact between monocytes and neutrophils is required, and preformed neutrophil mediator(s) are likely to be involved in the suppression of cytokine mRNA and protein production. This study demonstrates a novel regulatory function of neutrophils on RV-Activated monocytes in vitro, challenging the paradigm that neutrophils are predominantly proinflammatory.

DOI 10.1136/thoraxjnl-2015-207781
Citations Scopus - 2Web of Science - 24
2016 Backer V, Baines KJ, Powell H, Porsbjerg C, Gibson PG, 'Increased asthma and adipose tissue inflammatory gene expression with obesity and Inuit migration to a western country', RESPIRATORY MEDICINE, 111, 8-15 (2016) [C1]

Background An overlap between obesity and asthma exists, and inflammatory cells in adipose tissue could drive the development of asthma. Comparison of adipose tissue ge... [more]

Background An overlap between obesity and asthma exists, and inflammatory cells in adipose tissue could drive the development of asthma. Comparison of adipose tissue gene expression among Inuit living in Greenland to those in Denmark provides an opportunity to assess how changes in adipose tissue inflammation can be modified by migration and diet. Objective To examine mast cell and inflammatory markers in adipose tissue and the association with asthma. Methods Two Inuit populations were recruited, one living in Greenland and another in Denmark. All underwent adipose subcutaneous biopsy, followed by clinical assessment of asthma, and measurement of AHR. Adipose tissue biopsies were homogenised, RNA extracted, and PCR was performed to determine the relative gene expression of mast cell (tryptase, chymase, CPA3) and inflammatory markers (IL-6, IL-1ß, and CD163). Results Of the 1059 Greenlandic Inuit participants, 556 were living in Greenland and 6.4% had asthma. Asthma was increased in Denmark (9%) compared to Greenland (3.6%, p < 0.0001) and associated with increased adipose tissue IL-6 gene expression and increased BMI. There was no association between asthma and adipose tissue mast cell gene expression. Pro-inflammatory gene expression (IL-6, IL-1ß) was higher in those living in Denmark, and with increasing BMI and dietary changes. The anti-inflammatory (M2) macrophage marker, CD163, was higher in Greenland-dwelling Inuit (p < 0.01). Conclusions No association was found between gene expression of mast cell markers in adipose tissue and asthma. Among Greenlandic Inuit, adipose tissue inflammation is also increased in those who migrate to Denmark, possibly as a result of dietary changes.

DOI 10.1016/j.rmed.2015.12.003
Citations Web of Science - 9
Co-authors Peter Gibson
2016 Simpson JL, Daly J, Baines KJ, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Hugenholtz P, Willner D, Gibson PG, 'Airway dysbiosis: Haemophilus influenzae and Tropheryma in poorly controlled asthma', EUROPEAN RESPIRATORY JOURNAL, 47, 792-800 (2016) [C1]

Asthma is a chronic inflammatory disorder of the airways where bacteria may act as protagonists of chronic inflammation. Little is known about the relation of airway in... [more]

Asthma is a chronic inflammatory disorder of the airways where bacteria may act as protagonists of chronic inflammation. Little is known about the relation of airway inflammation to the presence of specific bacterial taxa. We sought to describe the sputum microbiome in adults with poorly controlled asthma. DNA was extracted from induced sputum and microbial communities were profiled using 16S rRNA pyrosequencing. Bacterial species were characterised, and the relationship between microbial populations, asthma inflammatory subtypes and other covariates was explored. Real-time PCR was used to identify Tropheryma whipplei and Haemophilus influenzae in sputum. Adults with neutrophilic asthma had reduced bacterial diversity and species richness. Tropheryma was identified and confirmed with real-time PCR in 12 (40%) participants. Haemophilus occurred most often in a group of younger atopic males with an increased proportion of neutrophils. PCR confirmed the presence of H. influenzae in 35 (76%) participants with poorly controlled asthma. There are phenotype-specific alterations to the airway microbiome in asthma. Reduced bacterial diversity combined with a high prevalence of H. influenzae was observed in neutrophilic asthma, whereas eosinophilic asthma had abundant T. whipplei.

DOI 10.1183/13993003.00405-2015
Citations Scopus - 1Web of Science - 144
Co-authors Peter Gibson, Jodie Simpson
2016 Hodge S, Upham JW, Pizzutto S, Petsky HL, Yerkovich S, Baines KJ, Gibson P, Simpson JL, Buntain H, Chen ACH, Hodge G, Chang AB, 'Is Alveolar Macrophage Phagocytic Dysfunction in Children With Protracted Bacterial Bronchitis a Forerunner to Bronchiectasis?', CHEST, 149, 508-515 (2016) [C1]

Background: Children with recurrent protracted bacterial bronchitis (PBB) and bronchiectasis share common features, and PBB is likely a forerunner to bronchiectasis. Bo... [more]

Background: Children with recurrent protracted bacterial bronchitis (PBB) and bronchiectasis share common features, and PBB is likely a forerunner to bronchiectasis. Both diseases are associated with neutrophilic inflammation and frequent isolation of potentially pathogenic microorganisms, including nontypeable Haemophilus influenzae (NTHi), from the lower airway. Defective alveolar macrophage phagocytosis of apoptotic bronchial epithelial cells (efferocytosis), as found in other chronic lung diseases, may also contribute to tissue damage and neutrophil persistence. Thus, in children with bronchiectasis or PBB and in control subjects, we quantified the phagocytosis of airway apoptotic cells and NTHi by alveolar macrophages and related the phagocytic capacity to clinical and airway inflammation. Methods: Children with bronchiectasis (n = 55) or PBB (n = 13) and control subjects (n = 13) were recruited. Alveolar macrophage phagocytosis, efferocytosis, and expression of phagocytic scavenger receptors were assessed by flow cytometry. Bronchoalveolar lavage fluid interleukin (IL) 1ß was measured by enzyme-linked immunosorbent assay. Results: For children with PBB or bronchiectasis, macrophage phagocytic capacity was significantly lower than for control subjects (P=.003 and P<.001 for efferocytosis and P=.041 and P = .004 for phagocytosis of NTHi; PBB and bronchiectasis, respectively); median phagocytosis of NTHi for the groups was as follows: bronchiectasis, 13.7% (interquartile range [IQR], 11%-16%); PBB, 16% (IQR, 11%-16%); control subjects, 19.0% (IQR, 13%-21%); and median efferocytosis for the groups was as follows: bronchiectasis, 14.1% (IQR, 10%-16%); PBB, 16.2% (IQR, 14%-17%); control subjects, 18.1% (IQR, 16%-21%). Mannose receptor expression was significantly reduced in the bronchiectasis group (P = .019), and IL-1ß increased in both bronchiectasis and PBB groups vs control subjects. Conclusions: A reduced alveolar macrophage phagocytic host response to apoptotic cells or NTHi may contribute to neutrophilic inflammation and NTHi colonization in both PBB and bronchiectasis. Whether this mechanism also contributes to the progression of PBB to bronchiectasis remains unknown.

DOI 10.1016/j.chest.2015.10.066
Citations Scopus - 4Web of Science - 38
Co-authors Peter Gibson, Jodie Simpson
2016 Negewo NA, McDonald VM, Baines KJ, Wark PAB, Simpson JL, Jones PW, Gibson PG, 'Peripheral blood eosinophils: a surrogate marker for airway eosinophilia in stable COPD', INTERNATIONAL JOURNAL OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE, 11 (2016) [C1]

Introduction: Sputum eosinophilia occurs in approximately one-third of stable chronic obstructive pulmonary disease (COPD) patients and can predict exacerbation risk an... [more]

Introduction: Sputum eosinophilia occurs in approximately one-third of stable chronic obstructive pulmonary disease (COPD) patients and can predict exacerbation risk and response to corticosteroid treatments. Sputum induction, however, requires expertise, may not always be successful, and does not provide point-of-care results. Easily applicable diagnostic markers that can predict sputum eosinophilia in stable COPD patients have the potential to progress COPD management. This study investigated the correlation and predictive relationship between peripheral blood and sputum eosinophils. It also examined the repeatability of blood eosinophil counts. Methods: Stable COPD patients (n=141) were classified as eosinophilic or noneosinophilic based on their sputum cell counts (=3%), and a cross-sectional analysis was conducted comparing their demographics, clinical characteristics, and blood cell counts. Receiver operating characteristic curve analysis was used to assess the predictive ability of blood eosinophils for sputum eosinophilia. Intraclass correlation coefficient was used to examine the repeatability of blood eosinophil counts. Results: Blood eosinophil counts were significantly higher in patients with sputum eosinophilia (n=45) compared to those without (0.3×109/L vs 0.15×109/L; P<0.0001). Blood eosinophils correlated with both the percentage (¿=0.535; P<0.0001) and number of sputum eosinophils (¿=0.473; P<0.0001). Absolute blood eosinophil count was predictive of sputum eosinophilia (area under the curve =0.76, 95% confidence interval [CI] =0.67¿0.84; P<0.0001). At a threshold of =0.3×109/L (specificity =76%, sensitivity =60%, and positive likelihood ratio =2.5), peripheral blood eosinophil counts enabled identification of the presence or absence of sputum eosinophilia in 71% of the cases. A threshold of =0.4×109/L had similar classifying ability but better specificity (91.7%) and higher positive likelihood ratio (3.7). In contrast, =0.2×109/L offered a better sensitivity (91.1%) for ruling out sputum eosinophilia. There was a good agreement between two measurements of blood eosinophil count over a median of 28 days (intraclass correlation coefficient =0.8; 95% CI =0.66¿0.88; P<0.0001). Conclusion: Peripheral blood eosinophil counts can help identify the presence or absence of sputum eosinophilia in stable COPD patients with a reasonable degree of accuracy.

DOI 10.2147/COPD.S100338
Citations Scopus - 1Web of Science - 122
Co-authors Peter Wark, Peter Gibson, Vanessa Mcdonald, Jodie Simpson
2016 Williams EJ, Baines KJ, Smart JM, Gibson PG, Wood LG, 'Rosuvastatin, lycopene and omega-3 fatty acids: A potential treatment for systemic inflammation in COPD; a pilot study', Journal of Nutrition and Intermediary Metabolism, 5, 86-95 (2016) [C1]

Background/Aims Chronic Obstructive Pulmonary Disease (COPD) is characterized by airway inflammation, in which contributes to loss of lung function. Systemic inflammati... [more]

Background/Aims Chronic Obstructive Pulmonary Disease (COPD) is characterized by airway inflammation, in which contributes to loss of lung function. Systemic inflammation is also a feature of COPD contributing to many associated co-morbidities. Statins, omega-3 fatty acids (docosahexanoic acid, DHA and eicosapentanoic acid, EPA) and lycopene have been shown to decrease systemic inflammation; however their combined effects have not been investigated. This study aims to identify changes in systemic and airway inflammation induced by statins alone or in combination with DHA, EPA and lycopene in COPD. Methods COPD patients (n¿=¿11) received rosuvastatin (20¿mg/day) for 4 weeks, then a combination of rosuvastatin (20¿mg/day), DHA and EPA (1.5¿g/day) and lycopene (45¿mg/day) for 8 weeks. Blood and sputum were collected and lung function measured by spirometry at baseline, week 4 and 12. Plasma fatty acids were measured using gas chromatography, while plasma carotenoids were analysed using high-performance liquid chromatography. Plasma CRP and IL-6 concentrations were measured using ELISA; and peripheral blood gene expression was measured using the nCounter¿ GX Human Inflammation Kit 2. Results Following the interventions, clinical characteristics and plasma IL-6 and CRP were unchanged. Sputum neutrophil proportion and absolute count was increased and macrophage proportion decreased by rosuvastatin (P¿=¿0.020 and P¿=¿0.015; respectively). Rosuvastatin increased LTB4R and decreased CXCL10 and AGER gene expression in white blood cells. The addition of lycopene and omega-3 fatty acids decreased LTB4R and increased CXCL10 to basal levels, whilst combined use of interventions increased ALOX15 blood gene expression. Conclusion This study shows that rosuvastatin, omega-3 fatty acids and lycopene have some anti-inflammatory effects systemically, but rosuvastatin may increase airway neutrophils, which would be undesirable in COPD patients, warranting further investigation.

DOI 10.1016/j.jnim.2016.04.006
Citations Scopus - 9
Co-authors Peter Gibson, Lisa Wood, Evan J Williams
2016 Porsbjerg C, Baines K, Gibson P, Bergqvist A, Erjefalt JS, Sverrild A, Backer V, 'IL-33 is related to innate immune activation and sensitization to HDM in mild steroid-free asthma', CLINICAL AND EXPERIMENTAL ALLERGY, 46, 564-574 (2016) [C1]

Summary: Background: IL-33 represents a potential link between the airway epithelium and induction of a Th2-type inflammatory response in asthma. However, the associati... [more]

Summary: Background: IL-33 represents a potential link between the airway epithelium and induction of a Th2-type inflammatory response in asthma. However, the association with markers of eosinophilic airway inflammation has not previously been reported in patients with steroid-free asthma. Aim: To describe the relationship between airway IL-33 and markers of eosinophilic airway inflammation, as well potential triggers of IL-33, in mild, steroid-free asthma. Methods: IL-33 mRNA expression and IL-33 immunoreactivity were measured in bronchial biopsies from patients with asthma untreated with inhaled steroids and healthy individuals. Furthermore, fractional exhaled nitric oxide (FeNO) and eosinophils in sputum and BAL were measured, as well as airway hyperresponsiveness to mannitol and methacholine. Epithelial integrity was assessed by computerized image analysis on haematoxylin-stained sections, and TLR mRNA expression by PCR. Results: A total of 23 patients with asthma and 10 healthy individuals were examined (age: 24 years (20-40); females: 53%). The level of IL-33 mRNA expression was significantly higher in patients with asthma compared to healthy individuals (Median (IQR) 1.12 (0.78) vs. 0.86, P = 0.04). There was a positive correlation between IL-33 mRNA expression and the level of FeNO (r = 0.56, P = 0.01), whereas there was no association with airway or blood eosinophils. IL-33 expression was unrelated to loss of epithelial integrity, but correlated with an increased expression of TLR2 and TLR4 (TLR2: = 0.47, P = 0.04; TLR4: 0.68, P < 0.001), as well allergy to house dust mites (HDMs). Conclusion: In mild untreated asthma, the expression of IL-33 mRNA in bronchial mucosa is related to innate immune activation and allergic sensitization to HDM, rather than epithelial damage, and correlates with FeNO. These findings suggest that in mild allergic asthma, IL-33 may represent a link between innate immune activation and FeNO production.

DOI 10.1111/cea.12702
Citations Scopus - 1Web of Science - 15
Co-authors Peter Gibson
2015 Tang FSM, Foxley GJ, Gibson PG, Burgess JK, Baines KJ, Oliver BG, 'Altered Innate Immune Responses in Neutrophils from Patients with Well- and Suboptimally Controlled Asthma', Mediators of Inflammation, 2015, 1-11 (2015) [C1]
DOI 10.1155/2015/219374
Citations Scopus - 9Web of Science - 7
Co-authors Peter Gibson
2015 Scott HA, Latham JR, Callister R, Pretto JJ, Baines K, Saltos N, Upham JW, Wood LG, 'Acute exercise is associated with reduced exhaled nitric oxide in physically inactive adults with asthma', ANNALS OF ALLERGY ASTHMA & IMMUNOLOGY, 114, 470-479 (2015) [C1]

Background Although exercise has multiple health benefits, relatively little attention has been paid to its potential therapeutic effects in those with asthma. Objectiv... [more]

Background Although exercise has multiple health benefits, relatively little attention has been paid to its potential therapeutic effects in those with asthma. Objective To examine the effects of acute exercise on inflammation in physically inactive and active adults with asthma. Methods Fourteen adults with asthma (n = 6 physically inactive, n = 8 physically active) completed (1) 30 minutes of moderate-intensity exercise on a treadmill and (2) 30 minutes of rest in random order, with 4 weeks between sessions. Exhaled nitric oxide (eNO) was measured before and after the intervention (0, 0.5, 1, 2, 4, and 24 hours). Blood inflammatory mediators were measured before and after the intervention (0, 2, and 24 hours). Results Physically inactive participants had a significant decrease in eNO 4 hours after exercise (-4.8 ppb, -6.4 to -0.5 ppb, P =.028), which was not observed in physically active participants (P =.362). Interluekin-1 receptor antagonist increased in the physically inactive group 2 hours after exercise, with this increase strongly correlated with the decrease in eNO at 4 hours (R = -0.685, P =.007) and 24 hours (R = -0.659, P =.014) after exercise. Interleukin-6 was increased significantly 2 hours after exercise in physically inactive participants. Blood neutrophils and nuclear factor erythroid 2-like 2 gene expression were increased 2 hours after exercise in the overall cohort. Conclusion This study demonstrates that acute moderate-intensity exercise is associated with decreased eNO in physically inactive adults with asthma and suggests that interluekin-1 receptor antagonist could have a role in mediating this effect. The attenuated response in physically active participants might be due to the sustained anti-inflammatory effects of exercise training. Future studies should investigate the impact of exercise intensity and exercise training on airway inflammation in those with asthma.

DOI 10.1016/j.anai.2015.04.002
Citations Web of Science - 31
Co-authors Robin Callister, Hayley Scott, Lisa Wood
2015 Baines KJ, Backer V, Gibson PG, Powell H, Porsbjerg CM, 'Investigating the effects of arctic dietary intake on lung health', European Journal of Clinical Nutrition, 69 1262-1266 (2015) [C1]

Background/Objective:Preservation of lung health requires understanding the modifiable risk factors of airflow limitation. This study investigates the association betwe... [more]

Background/Objective:Preservation of lung health requires understanding the modifiable risk factors of airflow limitation. This study investigates the association between diet and lung function in a population of Greenland Inuit residing in the Arctic (Greenland) or Western Europe (Denmark).Subjects/Methods:Two unselected Inuit populations were recruited, one living in Greenland (Urban (Nuuk) n=358; Rural (Uummannaq) n=207) and the other in Denmark (n=539). Lung function was measured using spirometry and diet by a food frequency questionnaire. Factors associated with airflow limitation were assessed using multiple linear regression models.Results:The dietary composition differed significantly in the two regions, with higher whale, seal and wild meat intake and lower fruit and vegetable intake in the Arctic regions compared with Denmark. Consumption of vegetables (P=0.004) and whale and/or seal (P<0.0001) was significantly and positively associated with FEV 1, as well as with FVC (vegetables: P=0.001, whale and/or seal: P=0.002). Regular fruit intake was included in the statistical models; however, it did not reach statistical significance (FEV 1: P=0.053; FVC: P=0.055).Conclusions:High dietary intake of vegetables as well as intake of arctic marine mammals had independent positive associations with lung function in this cohort of Greenlandic Inuit. These findings suggest an additive role of dietary intake of antioxidants and unsaturated fatty acids in lung health, which warrants prospective evaluation.

DOI 10.1038/ejcn.2015.85
Citations Scopus - 10Web of Science - 9
Co-authors Peter Gibson
2015 Fu J-J, McDonald VM, Baines KJ, Gibson PG, 'Airway IL-1ß and Systemic Inflammation as Predictors of Future Exacerbation Risk in Asthma and COPD', CHEST, 148, 618-629 (2015) [C1]
DOI 10.1378/chest.14-2337
Citations Scopus - 9Web of Science - 4
Co-authors Vanessa Mcdonald, Peter Gibson
2015 Hodge G, Upham JW, Chang AB, Baines KJ, Yerkovich ST, Pizzutto SJ, Hodge S, 'Increased Peripheral Blood Pro-Inflammatory/Cytotoxic Lymphocytes in Children with Bronchiectasis', PLOS ONE, 10 (2015) [C1]
DOI 10.1371/journal.pone.0133695
Citations Scopus - 1Web of Science - 9
2015 Bowden N, Beveridge N, Ashton K, Baines K, Scott R, 'Understanding Xeroderma Pigmentosum Complementation Groups Using Gene Expression Profiling after UV-Light Exposure', International Journal of Molecular Sciences, 16 (2015) [C1]

Children with the recessive genetic disorder Xeroderma Pigmentosum (XP) have extreme sensitivity to UV-light, a 10,000-fold increase in skin cancers from age 2 and rare... [more]

Children with the recessive genetic disorder Xeroderma Pigmentosum (XP) have extreme sensitivity to UV-light, a 10,000-fold increase in skin cancers from age 2 and rarely live beyond 30 years. There are seven genetic subgroups of XP, which are all resultant of pathogenic mutations in genes in the nucleotide excision repair (NER) pathway and a XP variant resultant of a mutation in translesion synthesis, POLH. The clinical symptoms and severity of the disease is varied across the subgroups, which does not correlate with the functional position of the affected protein in the NER pathway. The aim of this study was to further understand the biology of XP subgroups, particularly those that manifest with neurological symptoms. Whole genome gene expression profiling of fibroblasts from each XP complementation group was assessed before and after UV-light exposure. The biological pathways with altered gene expression after UV-light exposure were distinct for each subtype and contained oncogenic related functions such as perturbation of cell cycle, apoptosis, proliferation and differentiation. Patients from the subgroups XP-B and XP-F were the only subgroups to have transcripts associated with neuronal activity altered after UV-light exposure. This study will assist in furthering our understanding of the different subtypes of XP which will lead to better diagnosis, treatment and management of the disease.

Citations Scopus - 1Web of Science - 1
Co-authors Nikola Bowden, Rodney Scott
2015 Gao P, Gibson PG, Baines KJ, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Jenkins C, Peters MJ, Zhang J, Simpson JL, 'Anti-inflammatory deficiencies in neutrophilic asthma: Reduced galectin-3 and IL-1RA/IL-1ß', Respiratory Research, 16, 1-10 (2015) [C1]
DOI 10.1186/s12931-014-0163-5
Citations Scopus - 7Web of Science - 3
Co-authors Peter Gibson, Jodie Simpson
2015 Baines KJ, Wright TK, Simpson JL, McDonald VM, Wood LG, Parsons KS, Wark PA, Gibson PG, 'Airway beta-Defensin-1 Protein Is Elevated in COPD and Severe Asthma', MEDIATORS OF INFLAMMATION, 2015 (2015) [C1]
DOI 10.1155/2015/407271
Citations Scopus - 2Web of Science - 1
Co-authors Peter Wark, Jodie Simpson, Peter Gibson, Vanessa Mcdonald, Lisa Wood
2014 Simpson JL, Powell H, Baines KJ, Milne D, Coxson HO, Hansbro PM, Gibson PG, 'The Effect of Azithromycin in Adults with Stable Neutrophilic COPD: A Double Blind Randomised, Placebo Controlled Trial', PLOS ONE, 9 (2014) [C1]
DOI 10.1371/journal.pone.0105609
Citations Scopus - 7Web of Science - 4
Co-authors Peter Gibson, Jodie Simpson
2014 Baines KJ, Upham JW, Yerkovich ST, Chang AB, Marchant JM, Carroll M, Simpson JL, Gibson PG, 'Mediators of Neutrophil Function in Children With Protracted Bacterial Bronchitis', CHEST, 146, 1013-1020 (2014) [C1]

BACKGROUND: Protracted bacterial bronchitis (PBB) is a common and treatable cause of chronic wet cough in children in which the mechanisms are not understood. Th is stu... [more]

BACKGROUND: Protracted bacterial bronchitis (PBB) is a common and treatable cause of chronic wet cough in children in which the mechanisms are not understood. Th is study investigates the IL-1 pathway and a neutrophil gene expression signature in PBB.

DOI 10.1378/chest.14-0131
Citations Scopus - 4Web of Science - 8
Co-authors Peter Gibson, Jodie Simpson
2014 Gunawardhana LP, Gibson PG, Simpson JL, Benton MC, Lea RA, Baines KJ, 'Characteristic DNA methylation profiles in peripheral blood monocytes are associated with inflammatory phenotypes of asthma', EPIGENETICS, 9, 1302-1316 (2014) [C1]
DOI 10.4161/epi.33066
Citations Scopus - 6Web of Science - 9
Co-authors Peter Gibson, Jodie Simpson
2014 Baines KJ, Backer V, Gibson PG, Powel H, Porsbjerg CM, 'Impaired lung function is associated with systemic inflammation and macrophage activation.', The European Respiratory Journal, 45, 557-559 (2014) [C1]
Citations Scopus - 3Web of Science - 3
Co-authors Peter Gibson
2014 Simpson JL, Baines KJ, Ryan N, Gibson PG, 'Neutrophilic asthma is characterised by increased rhinosinusitis with sleep disturbance and GERD', ASIAN PACIFIC JOURNAL OF ALLERGY AND IMMUNOLOGY, 32, 66-74 (2014) [C1]

Background: Asthma is a heterogeneous inflammatory disease and eosinophilic, noneosinophilic and neutrophilic forms are recognised. While clinically similar to eosinoph... [more]

Background: Asthma is a heterogeneous inflammatory disease and eosinophilic, noneosinophilic and neutrophilic forms are recognised. While clinically similar to eosinophilic asthma, patients with non-eosinophilic asthma have different responses to treatment and little is known about the triggers of symptoms and inflammation. Objective: This study sought to characterise asthma control, exacerbation frequency and potential triggers of non-eosinophilic and specifically neutrophilic asthma such as infection, gastroesophageal reflux disease, and rhinosinusitis. Methods: Adults with asthma (n=65; doctor's diagnosis plus demonstrated response to bronchodilator and/or airways hyperresponsiveness to hypertonic saline) were recruited from the Respiratory and Sleep Medicine Ambulatory Care Service at John Hunter Hospital, NSW, Australia. Questionnaires were administered to assess gastroesophageal reflux disease, rhinosinusitis and asthma control. A sputum induction was performed and sputum was processed for assessment of inflammatory cells, infection, and lipid laden macrophages (Oil Red O). Results: Participants with neutrophilic asthma (n=11, 23%) had a higher frequency of primary care doctor visits for asthma exacerbations and a high prevalence (>70%) of chest infections in the previous 12 months. There was also an increased prevalence of rhinosinusitis (64%) and increased symptoms of gastroesophageal reflux disease compared to those with eosinophilic asthma. Conclusions: The clinical pattern of neutrophilic asthma is different from paucigranulocytic and eosinophilic asthma with evidence of abnormal upper airways responses. Specific and targeted treatment of these airway problems may assist in the control and management of neutrophilic asthma.

Citations Scopus - 3Web of Science - 3
Co-authors Jodie Simpson, Peter Gibson
2014 Simpson JL, Phipps S, Baines KJ, Oreo KM, Gunawardhana L, Gibson PG, 'Elevated expression of the NLRP3 inflammasome in neutrophilic asthma', EUROPEAN RESPIRATORY JOURNAL, 43, 1067-1076 (2014) [C1]

Asthma is a heterogeneous inflammatory airways disorder where interleukin (IL)-1ß is thought to be a key mediator, especially in the neutrophilic subtype of asthma. The... [more]

Asthma is a heterogeneous inflammatory airways disorder where interleukin (IL)-1ß is thought to be a key mediator, especially in the neutrophilic subtype of asthma. The generation of active IL-1ß requires proteolytic cleavage typically mediated through the formation of a caspase-1-containing inflammasome. This study hypothesised that an IL-1ß endotype associated with the nucleotide-binding domain, leucine-rich repeat-containing family protein (NLRP)3/apoptosis-associated speck-like protein containing a caspase-recruitment domain (ASC)/caspase-1 inflammasome is characteristic of patients with the neutrophilic subtype of asthma. Participants with asthma (n=85) and healthy controls (n=27) underwent clinical assessment, spirometry and sputum induction. Sputum was processed for differential cell count, gene expression and protein mediators. NLRP3 and caspase-1 expression was also determined by immunocytochemistry. Sputum macrophages were isolated (n=8) and gene expression of NLRP3 and IL-1ß determined. There was significantly elevated gene expression of NLRP3, caspase-1, caspase-4, caspase-5 and IL-1ß in participants with neutrophilic asthma. Protein levels of IL-1ß were significantly higher in those with neutrophilic asthma and correlated with sputum IL-8 levels. Sputum macrophages, as well as sputum neutrophils in neutrophilic asthma, expressed NLRP3 and caspase-1 protein. NLRP3 inflammasome is upregulated in neutrophilic asthma and may regulate the inflammation process observed in this asthma phenotype through production of IL-1ß. Copyright © ERS 2014.

DOI 10.1183/09031936.00105013
Citations Scopus - 2Web of Science - 1
Co-authors Peter Gibson, Jodie Simpson
2014 Murphy VE, Mattes J, Powell H, Baines KJ, Gibson PG, 'Respiratory viral infections in pregnant women with asthma are associated with wheezing in the first 12 months of life', PEDIATRIC ALLERGY AND IMMUNOLOGY, 25, 151-158 (2014) [C1]

Background: There are few studies investigating the relationship between respiratory viral infection in pregnancy and asthma in the offspring, and none among mothers wi... [more]

Background: There are few studies investigating the relationship between respiratory viral infection in pregnancy and asthma in the offspring, and none among mothers with asthma. Infants of mothers with asthma are more likely to wheeze and have a higher risk of developing asthma than infants of non-asthmatic mothers. Methods: A prospective cohort study of viral infection in pregnancy was conducted between 2007 and 2009, and a subgroup of infants of mothers with asthma was followed up at 6 and 12 months of age. During common colds, nasal and throat swabs were collected from mothers and respiratory viruses detected by polymerase chain reaction. Respiratory health of infants was assessed by parent-completed questionnaire. Results: Twelve-month-old infants whose mothers had confirmed viral infections in pregnancy (n = 26) reported more frequent wheeze (40% had 4-12 wheeze attacks compared with 0%), sleep disturbed by wheeze (1 night per week or more in 60% vs. 11%), beta agonist treatment for wheeze (27% vs. 0%), prolonged colds (2 wk or longer 31% vs. 0%), more eczema (40% vs. 6.3%), and parent-perceived asthma (32% vs. 0%), compared with infants whose mothers had common colds without laboratory-confirmed viral infection (n = 16). Conclusions: This study demonstrates a relationship between maternal respiratory viral infection in pregnancy and wheezing illness in infants of mothers with asthma. Viral infections are the most common cause of asthma exacerbations in pregnancy, and infants of asthmatic mothers are at increased risk of asthma themselves. Further research is needed to elucidate the mechanisms involved. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

DOI 10.1111/pai.12156
Citations Web of Science - 3
Co-authors Peter Gibson, Vanessa Murphy, Joerg Mattes
2014 Oreo KM, Gibson PG, Simpson JL, Wood LG, McDonald VM, Baines KJ, 'Sputum ADAM8 expression is increased in severe asthma and COPD', CLINICAL AND EXPERIMENTAL ALLERGY, 44, 342-352 (2014) [C1]

Background: Severe asthma and chronic obstructive pulmonary disease (COPD) are chronic inflammatory airway diseases in which the mechanisms are not fully understood. A ... [more]

Background: Severe asthma and chronic obstructive pulmonary disease (COPD) are chronic inflammatory airway diseases in which the mechanisms are not fully understood. A disintegrin and metalloproteinase domain 8 (ADAM8) is an enzyme expressed on most leucocytes and may be important for facilitating leucocyte migration in respiratory disease. Objective: To investigate ADAM8 mRNA and protein expression in asthma and COPD and its relationship between asthma severity and inflammatory phenotypes. Methods: Induced sputum was collected from 113 subjects with asthma (severe n = 31, uncontrolled n = 39 and controlled n = 35), 20 subjects with COPD and 21 healthy controls. Sputum ADAM8 mRNA expression was measured by qPCR, and soluble ADAM8 (sADAM8) protein was measured in the sputum supernatant by validated ELISA. Results: ADAM8 mRNA correlated with ADAM8 protein levels (r = 0.27, P < 0.01). ADAM8 mRNA (P = 0.004) and sADAM8 protein (P = 0.014) levels were significantly higher in both asthma and COPD compared with healthy controls. ADAM8 mRNA (P = 0.035) and sADAM8 protein (P = 0.002) levels were significantly higher in severe asthma compared with controlled asthma. Total inflammatory cell count (P < 0.01) and neutrophils (P < 0.01) were also elevated in severe asthmatic sputum. Although ADAM8 mRNA was significantly higher in eosinophilic and neutrophilic asthma (P < 0.001), sADAM8 did not differ between asthma inflammatory phenotypes. ADAM8 expression positively correlated with sputum total cell count and sputum neutrophils. Conclusions and Clinical Relevance: ADAM8 expression is increased in both severe asthma and COPD and associated with sputum total cell count and neutrophils. ADAM8 may facilitate neutrophil migration to the airways in severe asthma and COPD. © 2013 John Wiley & Sons Ltd.

DOI 10.1111/cea.12223
Citations Scopus - 2Web of Science - 5
Co-authors Lisa Wood, Vanessa Mcdonald, Jodie Simpson, Peter Gibson
2014 Gunawardhana LP, Gibson PG, Simpson JL, Powell H, Baines KJ, 'Activity and expression of histone acetylases and deacetylases in inflammatory phenotypes of asthma', Clinical & Experimental Allergy, 44, 47-57 (2014) [C1]
DOI 10.1111/cea.12168
Citations Scopus - 5Web of Science - 7
Co-authors Peter Gibson, Jodie Simpson
2014 Baines KJ, Simpson JL, Wood LG, Scott RJ, Fibbens NL, Powell H, Cowan DC, Taylor DR, Cowan JO, Gibson PG, 'Sputum gene expression signature of 6 biomarkers discriminates asthma inflammatory phenotypes', JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 133, 997-1007 (2014) [C1]

Background Airway inflammation is associated with asthma exacerbation risk, treatment response, and disease mechanisms. Objective This study aimed to identify and valid... [more]

Background Airway inflammation is associated with asthma exacerbation risk, treatment response, and disease mechanisms. Objective This study aimed to identify and validate a sputum gene expression signature that discriminates asthma inflammatory phenotypes. Methods An asthma phenotype biomarker discovery study generated gene expression profiles from induced sputum of 47 asthmatic patients. A clinical validation study (n = 59 asthmatic patients) confirmed differential expression of key genes. A 6-gene signature was identified and evaluated for reproducibility (n = 30 asthmatic patients and n = 20 control subjects) and prediction of inhaled corticosteroid (ICS) response (n = 71 asthmatic patients). Receiver operating characteristic curves were calculated, and area under the curve (AUC) values were reported. Results From 277 differentially expressed genes between asthma inflammatory phenotypes, we identified 23 genes that showed highly significant differential expression in both the discovery and validation populations. A signature of 6 genes, including Charcot-Leydon crystal protein (CLC); carboxypeptidase A3 (CPA3); deoxyribonuclease I-like 3 (DNASE1L3); IL-1ß (IL1B); alkaline phosphatase, tissue-nonspecific isozyme (ALPL); and chemokine (C-X-C motif) receptor 2 (CXCR2), was reproducible and could significantly (P <.0001) discriminate eosinophilic asthma from other phenotypes, including patients with noneosinophilic asthma (AUC, 89.6%), paucigranulocytic asthma (AUC, 92.6%), or neutrophilic asthma (AUC, 91.4%) and healthy control subjects (AUC, 97.6%), as well as discriminating patients with neutrophilic asthma from those with paucigranulocytic asthma (AUC, 85.7%) and healthy control subjects (AUC, 90.8). The 6-gene signature predicted ICS response (>12% change in FEV1; AUC, 91.5%). ICS treatment reduced the expression of CLC, CPA3, and DNASE1L3 in patients with eosinophilic asthma. Conclusions A sputum gene expression signature of 6 biomarkers reproducibly and significantly discriminates inflammatory phenotypes of asthma and predicts ICS treatment response. This signature has the potential to become a useful diagnostic tool to assist in the clinical diagnosis and management of asthma. © 2013 American Academy of Allergy, Asthma & Immunology.

DOI 10.1016/j.jaci.2013.12.1091
Citations Web of Science - 2
Co-authors Peter Gibson, Jodie Simpson, Lisa Wood, Rodney Scott
2014 Gunawardhana LP, Baines KJ, Mattes J, Murphy VE, Simpson JL, Gibson PG, 'Differential DNA Methylation Profiles of Infants Exposed to Maternal Asthma During Pregnancy', PEDIATRIC PULMONOLOGY, 49, 852-862 (2014) [C1]

Background Asthma is a complex disease that involves both genetic factors and environmental exposures. Aberrant epigenetic modifications, such as DNA methylation, may b... [more]

Background Asthma is a complex disease that involves both genetic factors and environmental exposures. Aberrant epigenetic modifications, such as DNA methylation, may be important in asthma development. Fetal exposure to maternal asthma during critical periods of in utero development may lead to epigenetic alterations that predispose infants to a greater risk of developing asthma themselves. We investigated alterations in the DNA methylation profile of peripheral blood from infants exposed to maternal asthma during pregnancy. Methods Peripheral blood was collected from 12-month-old infants born to women with (n = 25) and without (n = 15) doctor diagnosed asthma during pregnancy. Genomic DNA was extracted, bisulfite converted, and hybridized to Infinium Methylation 27 arrays (Illumina), containing over27,000 CpGs from 14,495 genes. CpG loci in only autosomal genes were classified as differentially methylated at the 99% level (P < 0.01, |DiffScore| > 22 and delta beta >0.06). Results There were 70 CpG loci, corresponding to 67 genes that were significantly differentially methylated. Twelve CpG loci (11 genes) showed greater than 10% comparative difference in DNA methylation, including hyper-methylated loci of FAM181A, MRI1, PIWIL1, CHFR, DEFA1, MRPL28, AURKA, and hypo-methylated loci of NALP1L5, MAP8KIP3, ACAT2, and PM20D1 in maternal asthma. Methylation of MAPK8IP3 was significantly negatively correlated with maternal blood eosinophils (r = -0.38; P = 0.022), maternal eNO (r = -0.44; P = 0.005), and maternal serum total IgE (r = -0.39, P = 0.015). Methylation of AURKA negatively correlated with maternal hemoglobin (r = -0.43; P = 0.008), infants height (r = -0.51; P < 0.001) and weight (r = -0.36; P = 0.021). Methylation of PM20D1 was lower in infants born to mothers with asthma on inhaled corticosteroid treatment. Methylation of PM20D1 was lower and MRI1 was higher in infants born to atopic mothers without asthma. Conclusions In an Australian study population, exposure to maternal asthma during pregnancy is associated with differential methylation profiles of infants' peripheral blood DNA, which may act as risk factors for future asthma development. © 2013 Wiley Periodicals, Inc.

DOI 10.1002/ppul.22930
Citations Scopus - 6Web of Science - 6
Co-authors Peter Gibson, Jodie Simpson, Vanessa Murphy, Joerg Mattes
2014 Baines KJ, Pavord ID, Gibson PG, 'The role of biomarkers in the management of airways disease', INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE, 18, 1264-1268 (2014) [C1]
DOI 10.5588/ijtld.14.0226
Citations Scopus - 2Web of Science - 4
Co-authors Peter Gibson
2013 Kaiko GE, Loh Z, Spann K, Lynch JP, Lalwani A, Zheng Z, Davidson S, Uematsu S, Akira S, Hayball J, Diener KR, Baines KJ, Simpson JL, Foster PS, Phipps S, 'Toll-like receptor 7 gene deficiency and early-life Pneumovirus infection interact to predispose toward the development of asthma-like pathology in mice', JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 131, 1331-U132 (2013) [C1]
DOI 10.1016/j.jaci.2013.02.041
Citations Scopus - 6Web of Science - 2
Co-authors Jodie Simpson, Gerard Kaiko
2013 Simpson JL, McDonald VM, Baines KJ, Oreo KM, Wang F, Hansbro PM, Gibson PG, 'Influence of Age, Past Smoking, and Disease Severity on TLR2, Neutrophilic Inflammation, and MMP-9 Levels in COPD', MEDIATORS OF INFLAMMATION, 2013 (2013) [C1]
DOI 10.1155/2013/462934
Citations Scopus - 5Web of Science - 7
Co-authors Vanessa Mcdonald, Peter Gibson, Jodie Simpson
2013 Baines KJ, Hsu AC-Y, Tooze M, Gunawardhana LP, Gibson PG, Wark PAB, 'Novel immune genes associated with excessive inflammatory and antiviral responses to rhinovirus in COPD', RESPIRATORY RESEARCH, 14 (2013) [C1]
DOI 10.1186/1465-9921-14-15
Citations Scopus - 4Web of Science - 1
Co-authors Peter Wark, Peter Gibson, Alan Hsu
2013 Fu J-J, Baines KJ, Wood LG, Gibson PG, 'Systemic Inflammation Is Associated with Differential Gene Expression and Airway Neutrophilia in Asthma', OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 17, 187-199 (2013) [C1]
DOI 10.1089/omi.2012.0104
Citations Scopus - 6Web of Science - 1
Co-authors Lisa Wood, Peter Gibson
2012 Wood LG, Baines KJ, Fu J, Scott HA, Gibson PG, 'The neutrophilic inflammatory phenotype is associated with systemic inflammation in asthma', Chest, 142, 86-93 (2012) [C1]
Citations Scopus - 2Web of Science - 6
Co-authors Lisa Wood, Hayley Scott, Peter Gibson
2011 Baines KJ, Simpson JL, Gibson PG, 'Innate immune responses are increased in chronic obstructive pulmonary disease', PLoS ONE, 36 (2011) [C1]
DOI 10.1371/journal.pone.0018426
Citations Scopus - 7Web of Science - 2
Co-authors Peter Gibson, Jodie Simpson, Bronwyn Brew
2011 Baines KJ, Simpson JL, Wood LG, Scott R, Gibson PG, 'Systemic upregulation of neutrophil a-defensins and serine proteases in neutrophilic asthma', Thorax, 66, 942-947 (2011) [C1]
Citations Scopus - 7Web of Science - 2
Co-authors Lisa Wood, Rodney Scott, Peter Gibson, Jodie Simpson
2011 Baines KJ, Simpson JL, Wood LG, Scott R, Gibson PG, 'Transcriptional phenotypes of asthma defined by gene expression profiling of induced sputum samples', Journal of Allergy and Clinical Immunology, 127, 153.e9-160.e9 (2011) [C1]
DOI 10.1016/j.jaci.2010.10.024
Citations Scopus - 2Web of Science - 6
Co-authors Peter Gibson, Rodney Scott, Lisa Wood, Jodie Simpson
2011 Wang F, He XY, Baines KJ, Gunawardhana LP, Simpson JL, Li F, Gibson PG, 'Different inflammatory phenotypes in adults and children with acute asthma', European Respiratory Journal, 38, 567-574 (2011) [C1]
DOI 10.1183/09031936.00170110
Citations Scopus - 1Web of Science - 3
Co-authors Jodie Simpson, Peter Gibson
2010 Li J, Wang W, Baines KJ, Bowden NA, Hansbro PM, Gibson PG, Kumar RK, Foster PS, Yang M, 'IL-27/IFN-y induce MyD88-dependent steroid-resistant airway hyperresponsiveness by inhibiting glucocorticoid signaling in macrophages', Journal of Immunology, 185, 4401-4409 (2010) [C1]
DOI 10.4049/jimmunol.1001039
Citations Scopus - 1Web of Science - 3
Co-authors Ming Yang, Nikola Bowden, Peter Gibson
2010 Baines KJ, Simpson JL, Bowden NA, Scott R, Gibson PG, 'Differential gene expression and cytokine production from neutrophils in asthma phenotypes', European Respiratory Journal, 35, 522-531 (2010) [C1]
DOI 10.1183/09031936.00027409
Citations Scopus - 8Web of Science - 2
Co-authors Nikola Bowden, Jodie Simpson, Peter Gibson, Rodney Scott
2009 Baines KJ, Wood LG, Gibson PG, 'The nutrigenomics of asthma: Molecular mechanisms of airway neutrophilia following dietary antioxidant withdrawal', OMICS: A Journal of Integrative Biology, 13, 355-365 (2009) [C1]
DOI 10.1089/omi.2009.0042
Citations Scopus - 3Web of Science - 1
Co-authors Peter Gibson, Lisa Wood
2009 Baines KJ, Simpson JL, Scott R, Gibson PG, 'Immune responses of airway neutrophils are impaired in asthma', Experimental Lung Research, 35, 554-569 (2009) [C1]
DOI 10.1080/01902140902777490
Citations Scopus - 3Web of Science - 1
Co-authors Rodney Scott, Jodie Simpson, Peter Gibson
2009 Simpson JL, Baines KJ, Boyle MJ, Scott R, Gibson PG, 'Oncostatin M (OSM) is increased in asthma with incompletely reversible airflow obstruction', Experimental Lung Research, 35, 781-794 (2009) [C1]
DOI 10.3109/01902140902906412
Citations Scopus - 5Web of Science - 1
Co-authors Rodney Scott, Peter Gibson, Jodie Simpson
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Grants and Funding

Summary

Number of grants 51
Total funding $4,605,934

Click on a grant title below to expand the full details for that specific grant.


20251 grants / $30,000

Characterisation of BK polyomavirus associated nephropathy in kidney transplant recipients$30,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Associate Professor Katie Baines
Scheme Research Grant
Role Lead
Funding Start 2025
Funding Finish 2025
GNo G2500926
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

20241 grants / $390,000

New HOPE New Therapies$390,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Professor Simon Keely, Associate Professor Katie Baines, Conjoint Associate Professor Christopher Grainge, Professor Jay Horvat, Associate Professor Gerard Kaiko, Doctor Peter Pockney
Scheme Research Grant
Role Investigator
Funding Start 2024
Funding Finish 2026
GNo G2401426
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

20231 grants / $30,000

Improving early detection of childhood neurodevelopmental differences using mid-pregnancy biomarkers and infant behaviours$30,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Professor Vanessa Murphy, Doctor Olivia Whalen, Associate Professor Linda Campbell, Associate Professor Katie Baines, Professor Alison Lane
Scheme Research Grant
Role Investigator
Funding Start 2023
Funding Finish 2023
GNo G2300050
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

20221 grants / $10,484

Inflammasome activation in airways disease - a retrospective analysis of stored sputum samples in bronchiectasis, chronic obstructive pulmonary disease and asthma.$10,484

Funding body: Hunter New England Local Health District

Funding body Hunter New England Local Health District
Project Team Conjoint Professor Peter Wark, Dr Alexander Gordon, Associate Professor Katie Baines, Professor Jodie Simpson
Scheme John Hunter Hospital Charitable Trust Grant
Role Investigator
Funding Start 2022
Funding Finish 2022
GNo G2200980
Type Of Funding C2400 – Aust StateTerritoryLocal – Other
Category 2400
UON Y

20212 grants / $64,197

HMRI Researcher Bridging Fund$59,197

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Associate Professor Katie Baines
Scheme Research Grant
Role Lead
Funding Start 2021
Funding Finish 2021
GNo G2100305
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

Project consumables for the Molecular Biomarkers VIVA group to extend the NETs in COPD study$5,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Doctor Netsanet Negewo, Associate Professor Katie Baines
Scheme Research Grant
Role Investigator
Funding Start 2021
Funding Finish 2021
GNo G2101043
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

20201 grants / $30,000

How do fruit and vegetables improve lung function in childhood asthma?$30,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Doctor Bronwyn Berthon, Professor Lisa Wood, Doctor Evan Williams, Associate Professor Katie Baines, Professor Joerg Mattes
Scheme HCRF Project Grant
Role Investigator
Funding Start 2020
Funding Finish 2021
GNo G2001343
Type Of Funding C3200 – Aust Not-for Profit
Category 3200
UON Y

20191 grants / $10,000

Blood biomarker predictors of exacerbations of asthma during pregnancy, and their relationship to adverse perinatal outcomes$10,000

Funding body: Society of Obstetric Medicine of Australia and New Zealand

Funding body Society of Obstetric Medicine of Australia and New Zealand
Project Team Professor Vanessa Murphy, Associate Professor Katie Baines, Doctor Megan Jensen
Scheme Research Grant
Role Investigator
Funding Start 2019
Funding Finish 2019
GNo G1901011
Type Of Funding C3100 – Aust For Profit
Category 3100
UON Y

20182 grants / $319,184

Understanding how azithromycin prevents exacerbations in severe asthma$296,291

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor John Upham, Professor Jodie Simpson, Associate Professor Katie Baines, Doctor Kim-Anh Le Cao
Scheme Project Grant
Role Investigator
Funding Start 2018
Funding Finish 2020
GNo G1800570
Type Of Funding C1100 - Aust Competitive - NHMRC
Category 1100
UON Y

Establishing a comprehensive in vitro model of bronchiectasis$22,893

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Conjoint Associate Professor Christopher Grainge, Doctor Andrew Reid, Conjoint Professor Peter Wark, Associate Professor Katie Baines, Doctor Benjamin Vaughan, Doctor Punnam Chander Veerati
Scheme Research Grant
Role Investigator
Funding Start 2018
Funding Finish 2025
GNo G1901576
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

20175 grants / $805,867

Targeting neutrophil extracellular traps to reduce inflammation in severe asthma$610,239

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Associate Professor Katie Baines, Professor Peter Gibson, Professor Jodie Simpson, Professor Vanessa McDonald, Professor Dominik Hartl
Scheme Project Grant
Role Lead
Funding Start 2017
Funding Finish 2019
GNo G1500231
Type Of Funding C1100 - Aust Competitive - NHMRC
Category 1100
UON Y

Extracellular DNA in pleural fluid as a determinant of empyema pathology and treatment response$116,628

Funding body: Hunter New England Local Health District

Funding body Hunter New England Local Health District
Project Team Doctor Scott Twaddell, Associate Professor Katie Baines, Associate Professor Geraint Rogers
Scheme John Hunter Hospital Charitable Trust Grant
Role Investigator
Funding Start 2017
Funding Finish 2024
GNo G1700745
Type Of Funding C3200 – Aust Not-for Profit
Category 3200
UON Y

UON 2017 Researcher Equipment Grant$50,000

Funding body: University of Newcastle

Funding body University of Newcastle
Project Team Associate Professor Katie Baines
Scheme Researcher Equipment Grants
Role Lead
Funding Start 2017
Funding Finish 2017
GNo G1701163
Type Of Funding Internal
Category INTE
UON Y

Understanding the role of diet and gut bacteria in asthmatic children$20,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Professor Lisa Wood, Doctor Megan Jensen, Professor Joerg Mattes, Doctor Bronwyn Berthon, Associate Professor Katie Baines
Scheme Project Grant
Role Investigator
Funding Start 2017
Funding Finish 2017
GNo G1701528
Type Of Funding C3300 – Aust Philanthropy
Category 3300
UON Y

CoreScan Software - Dual Energy X-ray absorptiometry machine$9,000

Funding body: NSW Ministry of Health

Funding body NSW Ministry of Health
Project Team Doctor Bronwyn Berthon, Professor Lisa Wood, Associate Professor Katie Baines, Professor Vanessa McDonald
Scheme Medical Research Support Program (MRSP)
Role Investigator
Funding Start 2017
Funding Finish 2017
GNo G1701222
Type Of Funding C2400 – Aust StateTerritoryLocal – Other
Category 2400
UON Y

20163 grants / $898,249

Galectin-3 and phagocyte function in severe asthma$718,249

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor Jodie Simpson, Associate Professor Katie Baines, Professor Jay Horvat, Dr Johan Bylund
Scheme Project Grant
Role Investigator
Funding Start 2016
Funding Finish 2018
GNo G1500194
Type Of Funding Aust Competitive - Commonwealth
Category 1CS
UON Y

Targeting neutrophil extracellular traps as a novel therapeutic option in COPD$160,000

Funding body: Lung Foundation Australia

Funding body Lung Foundation Australia
Project Team Associate Professor Katie Baines
Scheme Boehringer Ingelheim Chronic Obstructive Pulmonary Disease Research Fellowship
Role Lead
Funding Start 2016
Funding Finish 2021
GNo G1500407
Type Of Funding C3200 – Aust Not-for Profit
Category 3200
UON Y

A sputum gene expression signature of 6 biomarkers can predict azithromycin treatment responsiveness and future frequent exacerbations in severe asthma$20,000

Funding body: National Clinical CRE in Severe Asthma

Funding body National Clinical CRE in Severe Asthma
Project Team Associate Professor Katie Baines
Scheme Seed Research Project
Role Lead
Funding Start 2016
Funding Finish 2016
GNo G1600443
Type Of Funding Internal
Category INTE
UON Y

20153 grants / $155,222

Improving diet quality to reduce risk of asthma attacks in children$120,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Professor Lisa Wood, Professor Joerg Mattes, Conjoint Professor Peter Wark, Associate Professor Katie Baines, Doctor Megan Jensen
Scheme Project Grant
Role Investigator
Funding Start 2015
Funding Finish 2016
GNo G1500957
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

Targeting neutrophil extracellular traps as a novel therapeutic option in COPD$25,222

Funding body: John Hunter Hospital Charitable Trust

Funding body John Hunter Hospital Charitable Trust
Project Team Associate Professor Katie Baines, Professor Peter Gibson
Scheme Research Grant
Role Lead
Funding Start 2015
Funding Finish 2015
GNo G1500570
Type Of Funding C3200 – Aust Not-for Profit
Category 3200
UON Y

(PROJECT)$10,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Professor Vanessa McDonald, Doctor Netsanet Negewo, Professor Peter Gibson, Associate Professor Katie Baines
Scheme Jennie Thomas Medical Research Travel Grant
Role Investigator
Funding Start 2015
Funding Finish 2015
GNo G1501430
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

20146 grants / $269,397

Greenland Study$140,000

Funding body: Bispebjerg Hospital

Funding body Bispebjerg Hospital
Project Team Professor Peter Gibson, Associate Professor Katie Baines, Professor Vibeke Backer
Scheme International Collaboration
Role Investigator
Funding Start 2014
Funding Finish 2016
GNo G1400539
Type Of Funding C3500 – International Not-for profit
Category 3500
UON Y

Identifying biomarkers that predict severe asthma exacerbations during pregnancy$60,000

Funding body: Thoracic Society of Australia and New Zealand

Funding body Thoracic Society of Australia and New Zealand
Project Team Associate Professor Katie Baines
Scheme TSANZ/National Asthma Council Australia - Asthma and Airways Career Development Fellowship
Role Lead
Funding Start 2014
Funding Finish 2014
GNo G1400730
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

Identifying biomarkers that predict severe asthma exacerbations during pregnancy$27,512

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Associate Professor Katie Baines, Emeritus Professor Michael Hensley
Scheme Project Grant
Role Lead
Funding Start 2014
Funding Finish 2014
GNo G1400631
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

The role of comorbidities and inflammation in Chronic Obstructive Pulmonary Disease (COPD)$20,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Mrs Netsanet Negewo, Professor Vanessa McDonald, Professor Peter Gibson, Associate Professor Katie Baines
Scheme Postgraduate Research Scholarship
Role Investigator
Funding Start 2014
Funding Finish 2015
GNo G1401393
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

Predicting who is at risk of worsening lung disease in Cystic Fibrosis$20,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Conjoint Professor Peter Wark, Associate Professor Katie Baines, Professor Vanessa McDonald, Professor Peter Gibson, Associate Professor Scott Bell, Associate Professor David Reid
Scheme Project Grant
Role Investigator
Funding Start 2014
Funding Finish 2014
GNo G1401410
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

Thoracic Society of Australia and New Zealand, Adelaide Australia, 4-9 April 2014$1,885

Funding body: University of Newcastle - Faculty of Health and Medicine

Funding body University of Newcastle - Faculty of Health and Medicine
Project Team Associate Professor Katie Baines
Scheme Travel Grant
Role Lead
Funding Start 2014
Funding Finish 2014
GNo G1400186
Type Of Funding Internal
Category INTE
UON Y

20135 grants / $598,830

Gene Expression Biomarkers Predict Severe Asthma Inflammatory Phenotype, Activation Mechanisms and Treatment Response$465,628

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Associate Professor Katie Baines, Professor Peter Gibson, Professor Jodie Simpson
Scheme Project Grant
Role Lead
Funding Start 2013
Funding Finish 2015
GNo G1200188
Type Of Funding Aust Competitive - Commonwealth
Category 1CS
UON Y

Protracted bacterial bronchitis: long term outcomes, systemic and airway predictors of recurrence$86,527

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor Anne Chang, Professor John Upham, Professor Peter Gibson, Dr Stephanie Yerkovich, Associate Professor Katie Baines, Dr Sandra Hodge, Mrs Susan Pizzuto, Associate Professor Ian Masters, Dr Helen Buntain
Scheme Project Grant
Role Investigator
Funding Start 2013
Funding Finish 2015
GNo G1200534
Type Of Funding Aust Competitive - Commonwealth
Category 1CS
UON Y

BD FACSCanto II Violet Laser (405nm) upgrade including Trigon and 2 photomultiplier tubes (PMTs)$25,000

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Conjoint Professor Peter Wark, Doctor Alan Hsu, Associate Professor Katie Baines, Professor Jodie Simpson, Professor Peter Gibson, Ms Hayley See
Scheme Equipment Grant
Role Investigator
Funding Start 2013
Funding Finish 2013
GNo G1201180
Type Of Funding Other Public Sector - Commonwealth
Category 2OPC
UON Y

DP73 Digital colour and monochrome camera + cellSens software + Xcite120 fluorescence lamp illuminator$20,000

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor Paul Foster, Doctor Alan Hsu, Professor Phil Hansbro, Professor Joerg Mattes, Associate Professor Katie Baines, Professor Jodie Simpson, Professor Rakesh Kumar, Doctor Nicole Hansbro, Doctor Steven Maltby, Associate Professor Ming Yang, Associate Professor Gerard Kaiko, Professor Jay Horvat, Professor Simon Keely, Doctor Andrew Jarnicki, Doctor Michael Fricker
Scheme Equipment Grant
Role Investigator
Funding Start 2013
Funding Finish 2013
GNo G1201186
Type Of Funding Other Public Sector - Commonwealth
Category 2OPC
UON Y

Thoracic Society of Australia and New Zealand$1,675

Funding body: University of Newcastle - Faculty of Health and Medicine

Funding body University of Newcastle - Faculty of Health and Medicine
Project Team Associate Professor Katie Baines
Scheme Travel Grant
Role Lead
Funding Start 2013
Funding Finish 2014
GNo G1300405
Type Of Funding Internal
Category INTE
UON Y

20125 grants / $435,832

2011 Research Fellowship - PRCARD$333,302

Funding body: University of Newcastle

Funding body University of Newcastle
Project Team Associate Professor Katie Baines
Scheme Research Fellowship
Role Lead
Funding Start 2012
Funding Finish 2014
GNo G1200356
Type Of Funding Internal
Category INTE
UON Y

Phenotype based management of severe persistent asthma$34,454

Funding body: John Hunter Hospital Charitable Trust

Funding body John Hunter Hospital Charitable Trust
Project Team Professor Vanessa McDonald, Associate Professor Katie Baines, Professor Peter Gibson
Scheme Research Grant
Role Investigator
Funding Start 2012
Funding Finish 2012
GNo G1200211
Type Of Funding Other Public Sector - State
Category 2OPS
UON Y

Body plethysmograph respiratory function system$33,076

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor Peter Gibson, Conjoint Professor Peter Wark, Professor Lisa Wood, Professor Jodie Simpson, Associate Professor Katie Baines, Professor Vanessa Murphy, Doctor Jeffrey Pretto, Emeritus Professor Michael Hensley, Doctor Jenny Mackney
Scheme Equipment Grant
Role Investigator
Funding Start 2012
Funding Finish 2012
GNo G1100973
Type Of Funding Other Public Sector - Commonwealth
Category 2OPC
UON Y

Phenotype based management of severe persistent asthma$20,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Professor Vanessa McDonald, Associate Professor Katie Baines, Professor Peter Gibson
Scheme Research Grant
Role Investigator
Funding Start 2012
Funding Finish 2013
GNo G1101169
Type Of Funding Contract - Aust Non Government
Category 3AFC
UON Y

Gene expression markers, mechanisms and steroid response of neutrophilic asthma$15,000

Funding body: University of Newcastle

Funding body University of Newcastle
Project Team Associate Professor Katie Baines
Scheme Fellowship Grant
Role Lead
Funding Start 2012
Funding Finish 2012
GNo G1200082
Type Of Funding Internal
Category INTE
UON Y

20117 grants / $92,989

Transcriptional Phenotyping of COPD and the relationship between neutrophilic airway inflammation, airway infection and activation of proinflammatory pathways$24,000

Funding body: John Hunter Hospital Charitable Trust

Funding body John Hunter Hospital Charitable Trust
Project Team Associate Professor Katie Baines, Professor Peter Gibson, Professor Jodie Simpson
Scheme Research Grant
Role Lead
Funding Start 2011
Funding Finish 2011
GNo G1100635
Type Of Funding Other Public Sector - State
Category 2OPS
UON Y

Identification of a specific biomarker signature that identifies asthma phenotype$23,700

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Associate Professor Katie Baines, Professor Jodie Simpson, Professor Peter Gibson
Scheme Project Grant
Role Lead
Funding Start 2011
Funding Finish 2011
GNo G1001054
Type Of Funding Contract - Aust Non Government
Category 3AFC
UON Y

Transcriptional Phenotyping of COPD and the relationship between neutrophilic airway inflammation, airway infection and activation of proinflammatory pathways$20,000

Funding body: Lung Foundation Australia

Funding body Lung Foundation Australia
Project Team Associate Professor Katie Baines
Scheme Grant-In-Aid for New and Emerging Researchers
Role Lead
Funding Start 2011
Funding Finish 2012
GNo G1000976
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

Epigenetic changes in infants associated with maternal asthma during pregnancy$10,000

Funding body: Thoracic Society of Australia and New Zealand

Funding body Thoracic Society of Australia and New Zealand
Project Team Associate Professor Katie Baines
Scheme Grant-in-aid (supported by Merck Sharp & Dohme)
Role Lead
Funding Start 2011
Funding Finish 2011
GNo G1000991
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

Lung Function (Spirometry) testing and sputum induction equipment - establishing 3 new clinical workstations. Medgraphics CPFS/d USB spirometer with breezesuite software (x3). Laptop computer (x3). Ul$10,000

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor Peter Gibson, Professor Jodie Simpson, Professor Lisa Wood, Associate Professor Katie Baines, Conjoint Professor Peter Wark, Professor Vanessa Murphy
Scheme Equipment Grant
Role Investigator
Funding Start 2011
Funding Finish 2011
GNo G1100038
Type Of Funding Other Public Sector - Commonwealth
Category 2OPC
UON Y

PULSE Education Prize$4,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Associate Professor Katie Baines
Scheme PULSE Education Prize
Role Lead
Funding Start 2011
Funding Finish 2011
GNo G1100342
Type Of Funding Contract - Aust Non Government
Category 3AFC
UON Y

Thoracic Society of Australia and New Zealand, Perth Convention and Exhibition Centre, 2 - 6 April 2011$1,289

Funding body: University of Newcastle - Faculty of Health and Medicine

Funding body University of Newcastle - Faculty of Health and Medicine
Project Team Associate Professor Katie Baines
Scheme Travel Grant
Role Lead
Funding Start 2011
Funding Finish 2012
GNo G1100297
Type Of Funding Internal
Category INTE
UON Y

20102 grants / $97,354

Epigenetic regulation of airways inflammation in non-eosinophilic asthma$63,354

Funding body: Asthma Foundation of New South Wales

Funding body Asthma Foundation of New South Wales
Project Team Professor Peter Gibson, Associate Professor Katie Baines, Professor Jodie Simpson
Scheme PhD Scholarships
Role Investigator
Funding Start 2010
Funding Finish 2011
GNo G0189748
Type Of Funding Grant - Aust Non Government
Category 3AFG
UON Y

Real time PCR machine (Mastercycler ep realplex2 from Epprndorf)$34,000

Funding body: NHMRC (National Health & Medical Research Council)

Funding body NHMRC (National Health & Medical Research Council)
Project Team Professor Jodie Simpson, Professor Peter Gibson, Conjoint Professor Peter Wark, Professor Lisa Wood, Professor Vanessa Murphy, Doctor Robert Scott, Associate Professor Katie Baines
Scheme Equipment Grant
Role Investigator
Funding Start 2010
Funding Finish 2010
GNo G1000056
Type Of Funding Other Public Sector - Commonwealth
Category 2OPC
UON Y

20083 grants / $311,655

Molecular mechanisms and treatment of non-eosinophilic asthma$300,000

Funding body: Hunter Medical Research Institute

Funding body Hunter Medical Research Institute
Project Team Professor Jodie Simpson, Associate Professor Katie Baines
Scheme Project Grant
Role Investigator
Funding Start 2008
Funding Finish 2010
GNo G0188825
Type Of Funding Contract - Aust Non Government
Category 3AFC
UON Y

Molecular subtypes of asthma defined by gene expression profiling$9,955

Funding body: University of Newcastle

Funding body University of Newcastle
Project Team Associate Professor Katie Baines
Scheme Early Career Researcher Grant
Role Lead
Funding Start 2008
Funding Finish 2008
GNo G0189618
Type Of Funding Internal
Category INTE
UON Y

American Thoracic Society, Metro Toronto Convention Centre, 16/5/2008 - 21/5/2008$1,700

Funding body: University of Newcastle

Funding body University of Newcastle
Project Team Associate Professor Katie Baines
Scheme Travel Grant
Role Lead
Funding Start 2008
Funding Finish 2008
GNo G0188599
Type Of Funding Internal
Category INTE
UON Y

20061 grants / $18,837

Molecular Pathogenesis of Non-Eosinophilic Asthma$18,837

Funding body: Asthma Foundation of New South Wales

Funding body Asthma Foundation of New South Wales
Project Team Associate Professor Katie Baines, Professor Peter Gibson
Scheme PhD Scholarships
Role Lead
Funding Start 2006
Funding Finish 2006
GNo G0185985
Type Of Funding Donation - Aust Non Government
Category 3AFD
UON Y

20041 grants / $37,837

Molecular Pathogensis of Non-Eosinphilic Asthma$37,837

Funding body: Asthma Foundation of New South Wales

Funding body Asthma Foundation of New South Wales
Project Team Professor Peter Gibson, Professor Rodney Scott, Associate Professor Katie Baines
Scheme PhD Scholarships
Role Investigator
Funding Start 2004
Funding Finish 2005
GNo G0183715
Type Of Funding Donation - Aust Non Government
Category 3AFD
UON Y
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Research Supervision

Number of supervisions

Completed9
Current2

Current Supervision

Commenced Level of Study Research Title Program Supervisor Type
2022 PhD Immune Mechanisms Involved in Tolerance and Rejection in Transplant Recipients PhD (Immunology & Microbiol), College of Health, Medicine and Wellbeing, The University of Newcastle Principal Supervisor
2017 PhD Extracellular DNA (eDNA) in Pleural Fluid as a Determinant of Pathology and Treatment Response PhD (Medicine), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor

Past Supervision

Year Level of Study Research Title Program Supervisor Type
2021 PhD Investigating Aberrant Inflammatory Signalling in Asthma PhD (Medicine), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2021 PhD Molecular Characterisation of Severe Asthma PhD (Medicine), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2020 PhD Characterisation of Neutrophil Subsets in Obstructive Airway Disease PhD (Medicine), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2019 PhD Dietary Fibre as a Modulator of Inflammation in Asthma PhD (Nutritional Biochemistry), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2019 PhD Strategies for Reducing Systemic Inflammation in Obesity PhD (Nutritional Biochemistry), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2018 PhD Galectin-3 and Phagocyte Function in Asthma PhD (Medicine), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2017 PhD The Role of Comorbidities and Inflammation in COPD PhD (Medicine), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2017 PhD Fatty Acids and the Innate Immune Response PhD (Nutritional Biochemistry), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
2014 PhD Epigenetic Regulation of Airway Inflammation in Asthma PhD (Medicine), College of Health, Medicine and Wellbeing, The University of Newcastle Co-Supervisor
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News

News • 15 Jun 2015

New study to examine fibre effect on asthma

Respiratory researchers from the University of Newcastle and HMRI are looking into whether a high-fibre diet can reduce airway inflammation in people with asthma.

Associate Professor Lisa Wood

News • 24 Mar 2014

Fruit-and-veg capsule set to combat obesity impacts

Hunter Medical Research Institute researchers are examining whether a simple fruit-and-vegetable supplement, taken in capsule form, can reduce inflammation produced by fat cells and thereby lower the risk of heart disease, diabetes, asthma and cancers in overweight people.

Assoc Prof Katie Baines

Position

Senior Research Fellow
Immune Health Program
School of Biomedical Sciences and Pharmacy
College of Health, Medicine and Wellbeing

Contact Details

Email katherine.baines@newcastle.edu.au
Phone 0240420090
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